Browse code

Adds README, other small changes

Max McGrath authored on 23/07/2021 18:16:50
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@@ -13,4 +13,6 @@ vignettes/*.bbl
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 vignettes/*.log
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 vignettes/*.pdf
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 vignettes/*.toc
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-vignettes/*.gz
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+vignettes/*.gz
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+*.swo
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+*.swp
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@@ -26,7 +26,7 @@ discordantRun <- function(v1, v2, x, y = NULL, transform = TRUE,
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     }
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     x <- exprs(x)
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-    if (is.null(y) == FALSE) { y <- exprs(y) }
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+    if (!is.null(y)) { y <- exprs(y) }
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     featureSize = dim(x)[1]
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     pdata <- cbind(v1, v2)
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+discordant
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+======
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+
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+R package for determining differential correlation of molecular 
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+feature pairs from -omics data using mixture models.
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+
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+### Information
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+
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+Method published in 
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+[Bioinformatics](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006287/)
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+
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+>Siska C, Bowler R, Kechris K. The discordant method: a novel approach for 
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+>differential correlation [published correction appears in Bioinformatics. 2017 
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+>Jan 1;33(1):150]. Bioinformatics. 2016;32(5):690-696. 
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+>doi:10.1093/bioinformatics/btv633
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+
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+Software published in 
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+[BMC Research Notes](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244536/)
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+
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+>Siska C, Kechris K. Differential correlation for sequencing data. BMC Res 
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+>Notes. 2017;10(1):54. Published 2017 Jan 19. doi:10.1186/s13104-016-2331-9
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+
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+### Installation
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+
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+Install via Bioconductor:
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+
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+    if (!requireNamespace("BiocManager", quietly=TRUE))
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+        install.packages("BiocManager")
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+    
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+    BiocManager::install("discordant")
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+
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+Install via Github:
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+
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+    if (!require("devtools")) install.packages("devtools")
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+    devtools::install_github("siskac/discordant")
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+
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+### Bug Reports
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+
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+Report bugs as issues on the [GitHub repository new
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+issue](https://github.com/siskac/discordant/issues/new)
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