@@ -13,4 +13,6 @@ vignettes/*.bbl

 vignettes/*.log

 vignettes/*.pdf

 vignettes/*.toc

-vignettes/*.gz

\ No newline at end of file

+vignettes/*.gz

+*.swo

+*.swp

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@@ -26,7 +26,7 @@ discordantRun <- function(v1, v2, x, y = NULL, transform = TRUE,

     }

     x <- exprs(x)

-    if (is.null(y) == FALSE) { y <- exprs(y) }

+    if (!is.null(y)) { y <- exprs(y) }

     featureSize = dim(x)[1]

     pdata <- cbind(v1, v2)

new file mode 100644

@@ -0,0 +1,40 @@

+discordant

+======

+

+R package for determining differential correlation of molecular 

+feature pairs from -omics data using mixture models.

+

+### Information

+

+Method published in 

+[Bioinformatics](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006287/)

+

+>Siska C, Bowler R, Kechris K. The discordant method: a novel approach for 

+>differential correlation [published correction appears in Bioinformatics. 2017 

+>Jan 1;33(1):150]. Bioinformatics. 2016;32(5):690-696. 

+>doi:10.1093/bioinformatics/btv633

+

+Software published in 

+[BMC Research Notes](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5244536/)

+

+>Siska C, Kechris K. Differential correlation for sequencing data. BMC Res 

+>Notes. 2017;10(1):54. Published 2017 Jan 19. doi:10.1186/s13104-016-2331-9

+

+### Installation

+

+Install via Bioconductor:

+

+    if (!requireNamespace("BiocManager", quietly=TRUE))

+        install.packages("BiocManager")

+    

+    BiocManager::install("discordant")

+

+Install via Github:

+

+    if (!require("devtools")) install.packages("devtools")

+    devtools::install_github("siskac/discordant")

+

+### Bug Reports

+

+Report bugs as issues on the [GitHub repository new

+issue](https://github.com/siskac/discordant/issues/new)

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