1. cummeRbund
  2. Graph
Graph of cummeRbund
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  • 32af841 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:13 -0400;
  • c4179c6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:13 -0400;
  • bfd5a44 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:12 -0400;
  • dc5849d (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:12 -0400;
  • 003aab7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:20 -0400;
  • 852ad0a (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:20 -0400;
  • a9475ff bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:10 +0000;
  • 4e6044b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:10 +0000;
  • cf5b3be bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:39 +0000;
  • 36d62b1 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:39 +0000;
  • e18eb65 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:10 +0000;
  • e2ae106 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:10 +0000;
  • 7d5cb76 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:08 -0400;
  • 045dd83 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:08 -0400;
  • 86b9fc5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:10 +0000;
  • 612a5cf (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:10 +0000;
  • b09d6df bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:55 -0400;
  • 0228672 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:22 -0400;
  • 2a82456 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:07 -0400;
  • 8d5a860 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:31 -0400;
  • 4e0c95b bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:29 -0400;
  • 8287661 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
  • e6e4c68 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 9b40fd3 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
  • e53e7cb bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:12 -0400;
  • 778300b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:36 -0400;
  • 51523c5 Minor version bump. by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 18:32:22 +0000;
  • b4eac7b modified loadGenes() to work with RSQLite update. by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 18:19:31 +0000;
  • 172d6e9 Removed unresolved commits by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 14:26:58 +0000;
  • 79d733e Merged from origin/devel by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 14:20:19 +0000;
  • cfe1c85 Fixed issue with RSQLite now requiring matching col names for dbWriteTable() @ database-setup.R:::populateSampleTable. Also deprecated features_3 from vignette. by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 14:20:12 +0000;
  • 6811553 Rebase by Loyal A. Goff <lgoff@csail.mit.edu> 2017-08-10 14:20:05 +0000;
  • fef3911 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • e73017c (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 6e0817c bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 1c7e9e5 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 11380ba (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 1017a45 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 345e1e1 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 43efaf2 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 4a704e0 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 4eb1f5e Fixed bug in getSigTable by Loyal A. Goff <lgoff@csail.mit.edu> 2016-02-04 02:23:55 +0000;
  • af9667d (origin/RELEASE_3_2, RELEASE_3_2) fix typo in backport by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-31 00:36:05 +0000;
  • d466773 more backports to pass check by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-29 06:57:52 +0000;
  • a01ca84 backport ggplot2 fix from devel, remove inst/doc by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-29 04:18:17 +0000;
  • 30f33e8 elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon) by Herve Pages <hpages@fhcrc.org> 2016-01-29 01:22:03 +0000;
  • d763364 Merging ggplot2_2.0.0 bug fixes (master) with release-3.2 branch by Loyal A. Goff <lgoff@csail.mit.edu> 2016-01-17 14:59:00 +0000;
  • 0013775 Merge branch 'master' into devel by Loyal A. Goff <lgoff@csail.mit.edu> 2016-01-17 14:39:15 +0000;
  • 7f6786f Fixing bug introduced after ggplot_2.0.0 causing BUILD Error. by Loyal A. Goff <lgoff@csail.mit.edu> 2016-01-14 05:57:57 +0000;
  • 9fd2f4b Trying to catch up after rebase. by Loyal A. Goff <lgoff@csail.mit.edu> 2016-01-14 05:56:14 +0000;
  • 4ce554d Fixed first bug causing BUILD error after ggplot_2.0.0 release. It won't be the last. by Loyal A. Goff <lgoff@csail.mit.edu> 2016-01-14 05:44:30 +0000;
  • 9048efe Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 7d4db3d Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • b1ecd32 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 200894d rtracklayer::import() has no more 'asRangedData' arg by Herve Pages <hpages@fhcrc.org> 2015-09-10 00:00:18 +0000;
  • 257ec05 use makeTxDb() instead of makeTranscriptDb() by Herve Pages <hpages@fhcrc.org> 2015-05-03 19:23:40 +0000;
  • 76bf5e4 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 1f3445d (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • bb61531 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 4d734d6 don't include .Rhistory in svn by Martin Morgan <mtmorgan@fhcrc.org> 2014-11-08 00:02:13 +0000;
  • d7573ea Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Loyal A. Goff <lgoff@csail.mit.edu> 2014-11-07 15:57:16 +0000;
  • eb9ac28 Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Loyal A. Goff <lgoff@csail.mit.edu> 2014-11-05 18:10:26 +0000;
  • e935516 setting up git-svn bridge by Loyal A. Goff <lgoff@csail.mit.edu> 2014-11-03 22:18:12 +0000;
  • 637ab13 (origin/RELEASE_3_0, RELEASE_3_0) Replaced sqliteCloseConnection() with dbDisconnect() in concordance with RSQLite 1.0.0 by Loyal A. Goff <lgoff@csail.mit.edu> 2014-11-03 22:15:24 +0000;
  • 32cf04c Minimal changes for compatibility with RSQLite 1.0.0 by Loyal A. Goff <lgoff@csail.mit.edu> 2014-11-01 19:31:29 +0000;
  • 9fe94ec Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • a0c75fd Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 821c3e8 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 1e0a757 follow renaming of TranscriptDb class -> TxDb by Herve Pages <hpages@fhcrc.org> 2014-07-28 22:47:32 +0000;
  • c407694 biocViews update by Sonali Arora <sarora@fhcrc.org> 2014-06-10 23:00:21 +0000;
  • ea5e16b biocViews update by Sonali Arora <sarora@fhcrc.org> 2014-06-10 22:58:04 +0000;
  • 2403a97 (origin/RELEASE_2_14, RELEASE_2_14) cummeRbund - Fixed deprecated ggplot2 argument 'legend' in sigMat(). Version bump to 2.6.1 by Loyal A. Goff <lgoff@csail.mit.edu> 2014-05-28 18:35:14 +0000;
  • 65a8ab2 Fixed 'legend' argument in sigMatrix to comply with deprecation in ggplot2_1.0.0. by Loyal A. Goff <lgoff@csail.mit.edu> 2014-05-23 20:19:48 +0000;
  • 66c8764 Updates and bug fixes for many aspects of cummeRbund. Incrementing to 2.7.1 by Loyal A. Goff <lgoff@csail.mit.edu> 2014-05-07 18:57:15 +0000;
  • 46e260a Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • ab9d681 Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 458d5ca First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • d599a6d Modify biocViews to remove duplicate biocViews by Sonali Arora <sarora@fhcrc.org> 2014-03-04 23:50:57 +0000;
  • c7309f9 modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 2035f5d (origin/RELEASE_2_13, RELEASE_2_13) Changed table param of UcscTrack() call from phyloP46wayPlacental to phyloP100wayAll. Thanks to Florian Hahne for the tip. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-12-12 17:39:16 +0000;
  • b94a39c Changed table param of UcscTrack() call from phyloP46wayPlacental to phyloP100wayAll. Thanks to Florian Hahne for the tip. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-12-12 17:38:00 +0000;
  • 2a8da05 rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:21:24 +0000;
  • 2fa63d6 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 9a27ad4 Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 2a45acd bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • ec4f8b0 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 8127d4c (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • 78c9e0a bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • ef20f83 remove stray .Rhistory checkins by Martin Morgan <mtmorgan@fhcrc.org> 2012-10-10 23:04:52 +0000;
  • ca6be72 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • fed1d75 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 7cb9a8e Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • b6a40fb CummeRbund 1.99.6 - Attached 'annotation' methods to BiocGenerics::annotation generics. by Loyal A. Goff <lgoff@csail.mit.edu> 2012-09-27 18:37:54 +0000;
  • ba34b42 - CummeRbund update and vignette tweaking.. - Fixed BiocGenerics 'annotation' import issue in cummeRbund. - Dropped import of BiocGenerics "annotation<-" by Loyal A. Goff <lgoff@csail.mit.edu> 2012-09-27 14:34:44 +0000;
  • b868467 The 'annotation' and 'annotation<-' generics have been moved from Biobase (2.17.8) to BiocGenerics (0.3.2). All packages that 'setMethods' on these generics import them from BiocGenerics. by Valerie Obenchain <vobencha@fhcrc.org> 2012-09-18 18:38:46 +0000;
  • 24b2a45 New features and bugfixes for cummeRbund in preparation for Bioc 2.11 release by Loyal A. Goff <lgoff@csail.mit.edu> 2012-09-17 18:14:41 +0000;
  • 56a710b Bugfixes to newest version of cummeRbund (issues dealing with reading in new files from cuffdiff 2.0) by Loyal A. Goff <lgoff@csail.mit.edu> 2012-05-08 22:18:50 +0000;
  • 03d8127 cummeRbund corrected to version 1.99.1 by Loyal A. Goff <lgoff@csail.mit.edu> 2012-05-08 18:25:53 +0000;
  • 29188bb CummeRbund version increment to 1.3.1 by Loyal A. Goff <lgoff@csail.mit.edu> 2012-05-08 18:25:07 +0000;
  • f34b65f Updating cummeRbund to v1.99.1. Now compatible with cufflinks/cuffdiff 2.0. See NEWS and vignettes for details about changes. by Loyal A. Goff <lgoff@csail.mit.edu> 2012-05-04 18:25:28 +0000;