1. csdR
  2. Graph
Graph of csdR
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  • fd838d6 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:34:42 -0400;
  • 799118b (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:34:42 -0400;
  • 58b32fe bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:31:06 -0400;
  • a3947f5 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:31:06 -0400;
  • 6fc4bf9 Updated DESCRIPTON and NEWS files to accomodate the latest bugfix by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2022-11-24 13:44:53 +0100;
  • eb30a8e Merge branch 'master' of git.bioconductor.org:packages/csdR by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2022-11-24 13:21:31 +0100;
  • 328776d Fixed segfault issue in partial_argsort by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2022-11-24 13:20:07 +0100;
  • 784b423 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:16 -0400;
  • 4e22cbd (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:25:16 -0400;
  • 509b479 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:57 +0000;
  • 5b79024 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:16:57 +0000;
  • 3a5f194 Updated to current date by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2022-03-04 14:27:55 +0100;
  • 2cd219e Added citation by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2022-03-04 14:26:20 +0100;
  • 95ee863 Clearified that missing values are not allowed. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-11-18 14:36:43 +0100;
  • 08a70f8 Version number bump by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-11-18 12:55:07 +0100;
  • 1a54635 Minor changes to README and vignette to sort out misunderstandings by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-11-18 11:56:49 +0100;
  • 8bda91a Merge branch 'master' of git.bioconductor.org:packages/csdR into main by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-11-17 15:58:37 +0100;
  • 8bf7ec9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:11:04 +0000;
  • 4d1e1ad (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:11:04 +0000;
  • 5b7be04 Fix for GitHub pkgdown error. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-09-09 14:16:31 +0200;
  • 5bc2feb Added logging statement at the end of run_csd(). Tried to fix GitHub pkgdown error. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-09-09 13:35:53 +0200;
  • 98b3803 Fixed critical bug triggered when verbose=TRUE by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-09-09 11:55:36 +0200;
  • 7c9b08e Fixed Open MP issue and changed rank calculation procedure by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-09-08 12:38:39 +0200;
  • fb9e5a4 Removed obselete code line. Version bump to trigger new build. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-07-12 11:21:28 +0200;
  • 83928bc Changed documentation of data according to Bioconductor moderator's request. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-25 10:07:36 +0200;
  • 0423d65 Deleted the website in the docs/ folder and moved it into an own branch using GitHub actions. Hope this works by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-23 15:10:44 +0200;
  • 33d9621 Changed the vignette and DESCRIPTION according to Bioconductor reviewer's requrest. Removed the useless scratch.R file. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-23 11:12:49 +0200;
  • 7388eac Included an install section in the vignette in addtion to breaking long lines. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-18 15:01:39 +0200;
  • d545409 Minor changes to satisfy the automated checking processes. The greatest change was to remove lazyData. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-18 11:22:18 +0200;
  • 6979fb6 Set the version number to 0.99.1 to comply with Bioconductor's version numbering guidelines by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-08 17:36:39 +0200;
  • bb6d425 Version to be submitted to Bioconductor after styling and minor refinements by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-08 16:52:41 +0200;
  • dd4c2a7 Add NEWS.md by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-08 12:55:32 +0200;
  • 44e19af Updated website by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-03 12:04:35 +0200;
  • d5f4ea2 Made some minor modifications to README, version number and line breaks by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-03 11:59:39 +0200;
  • a4b6fe2 Added missing website folder (was previously under .gitignore) by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-03 09:54:35 +0200;
  • e8cab4d First public development version. All components are present, including vignette and webpage. R CMD check passes, but some refinements might be necessary. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-06-03 09:45:20 +0200;
  • ae53ad4 Package begins to take shape. Vignette, checking, Bioconductor submission and article writing is still TODO. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-05-05 14:49:59 +0200;
  • 36ee952 Added README by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-02-23 16:45:28 +0100;
  • aea2e7d Added example script file by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-02-23 16:00:24 +0100;
  • 5616e00 Change some assignment = to <- to better comply with R styling standards by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-01-12 19:34:09 +0100;
  • 55e84b7 Fixed critical bug resulting in missing substrapping indexing of gene matrix by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-01-12 19:20:13 +0100;
  • fb3641e Added explicit SIMD statement to Welford algorithm by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-01-12 10:41:31 +0100;
  • 19041ce Implemented Welford algorithm to take care of variance computations. Removed superflous summary CSD computations. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2021-01-11 13:09:51 +0100;
  • 690950a Fixed bug where the variance was not correctly caculated by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2020-12-31 16:11:45 +0100;
  • a3ad3e4 Created license file by yaccos <jakobpeder.pettersen@gmail.com> 2020-11-20 09:35:17 +0100;
  • f89b770 Added the find_rho_and_var.R file, which is an executeable R-script carrying out CSD in an efficient manner (in practice bottlenecked by file IO). This requires the R packages 'glue', 'WGCNA' and 'optparse'. Instead of the original CSD method of subsampling, this script implements sampling by usual bootstrapping. by Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com> 2020-11-06 13:28:58 +0100;