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  • 94edd96 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:02:46 +0000;
  • 1eefa13 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:02:46 +0000;
  • 8ed9c38 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:53:43 +0000;
  • 9ecc85f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:53:43 +0000;
  • 26229e6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:42:53 +0000;
  • c3560d3 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:42:53 +0000;
  • b690225 remove GGdata from suggests by rscharpf <rscharpf@jhu.edu> 2020-12-01 10:51:33 -0500;
  • 88433a9 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:35:27 -0400;
  • bb8c119 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:35:27 -0400;
  • 4d09e85 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:19:05 +0000;
  • 162ee9a (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:19:05 +0000;
  • a836381 Remove dependency on SNPchip by rscharpf <rscharpf@jhu.edu> 2019-11-23 07:40:06 -0500;
  • f00f0ce bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:34:55 -0400;
  • 6f0bbea (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:04 -0400;
  • 813feae bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:49 -0400;
  • 7054c21 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:11 -0400;
  • 090f347 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:28 -0400;
  • 95b6fe6 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:45 -0400;
  • 7b66dd2 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:47:04 -0400;
  • 125b018 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:37 -0400;
  • cc1a98e (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:10 -0400;
  • d49c960 Bug fixes to illumina genotype calling when using cdfName="nopackage" option by mritchie <mritchie@wehi.edu.au> 2018-04-19 17:17:14 +1000;
  • 5bf92ab bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:08 -0400;
  • 150e13b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:25 -0400;
  • e1264a4 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • c46f8d0 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 17c862f bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 73c9e5b Updated DESCRIPTION file by unknown <mer36@cam.ac.uk> 2017-02-14 07:24:29 +0000;
  • 9411738 Updated DESCRIPTION file by unknown <mer36@cam.ac.uk> 2017-02-14 05:45:37 +0000;
  • b2cf0c8 added code to allow genotype calling for Illumina chips without the need for region specific package by unknown <mer36@cam.ac.uk> 2017-02-14 03:47:52 +0000;
  • 3ff30f1 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 0043524 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • ec455ee bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • e76543e Added SNP plotting functions by unknown <mer36@cam.ac.uk> 2016-05-06 06:53:13 +0000;
  • 1cc316d Also added some new plotting options and updated version number by unknown <mer36@cam.ac.uk> 2016-05-03 23:41:15 +0000;
  • cbfc52e Added nopackage option for krlmm by unknown <mer36@cam.ac.uk> 2016-05-03 23:39:54 +0000;
  • 63f5458 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 156821f (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 5fa1dbf Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 759f739 (origin/RELEASE_3_2, RELEASE_3_2) replace reference to texi2dvi with pdflatex as the former has been removed from MikTex by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-12 20:53:13 +0000;
  • d68479a replace reference to texi2dvi with pdflatex as the former has been removed from MikTex by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-01-12 20:52:19 +0000;
  • eb9510e Fixing contact information by Benilton Carvalho <bcarvalh@jhsph.edu> 2016-01-07 20:33:24 +0000;
  • 6b57052 Fixing contact information by Benilton Carvalho <bcarvalh@jhsph.edu> 2016-01-07 20:29:51 +0000;
  • 461259c Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • ba49f64 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • db730ee Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 1d64647 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • b6ce7e1 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 795fc25 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • cc87929 bug fix to krlmm by unknown <mer36@cam.ac.uk> 2015-04-03 00:01:45 +0000;
  • c213b0b Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 41a8d49 (origin/RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 73b2f3b Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 1613e94 Added support for humanexome12v1.2a chip by unknown <mer36@cam.ac.uk> 2014-09-25 11:06:52 +0000;
  • ccbb01f Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Rob Scharp <rscharpf@jhsph.edu> 2014-09-19 14:22:04 +0000;
  • 03e298b Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Rob Scharp <rscharpf@jhsph.edu> 2014-08-26 01:45:03 +0000;
  • 3eec840 Added the requirement for more than 8 samples when running krlmm by unknown <mer36@cam.ac.uk> 2014-06-11 01:17:05 +0000;
  • 987f58f Changed tolerance allowed for reading in arrays with different numbers of probes (was 10000, now 4% of total number of probes by unknown <mer36@cam.ac.uk> 2014-06-10 23:43:33 +0000;
  • 7a75b69 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 7a9a7bd (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 1a6fb8a First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • b7e51e9 Added Illumina Omni 2.5 8 v1.1b chip as a supported chip type by unknown <mer36@cam.ac.uk> 2014-04-02 12:28:38 +0000;
  • 3d8f487 Changes to krlmm to avoid error that occurs in k-means clustering when all intensities are identical by unknown <mer36@cam.ac.uk> 2014-04-01 02:51:49 +0000;
  • 1e41609 Removed crlmm::: from .R files and set saveDate=FALSE in genotype.Illumina() man page to clean up Notes and Warnings by unknown <mer36@cam.ac.uk> 2014-03-28 12:43:01 +0000;
  • b2dc56d Added back support for human1mv1c chip (accidentally deleted) by unknown <mer36@cam.ac.uk> 2014-03-10 04:38:28 +0000;
  • d94b2bc modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • b0c18c9 (origin/RELEASE_2_13, RELEASE_2_13) merging NAMESPACE with AnnotatedDataFrame import by Rob Scharp <rscharpf@jhsph.edu> 2014-02-21 19:08:02 +0000;
  • 8bfebd1 bumped version as all packages that depend on Rcpp must be rebuilt by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-02-04 18:07:39 +0000;
  • 6fcc1d2 bumped version as all packages that depend on Rcpp must be rebuilt by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-02-04 18:03:14 +0000;
  • c27ba9c merged matt's changes on the collab branch by Rob Scharp <rscharpf@jhsph.edu> 2014-02-03 14:03:16 +0000;
  • 5dc5f43 increment release version by Rob Scharp <rscharpf@jhsph.edu> 2013-10-31 02:00:59 +0000;
  • b8dbfb4 merge bug fix for creating NChannelSet from the devel branch by Rob Scharp <rscharpf@jhsph.edu> 2013-10-31 02:00:52 +0000;
  • eaa7924 version bump by Rob Scharp <rscharpf@jhsph.edu> 2013-10-31 01:45:39 +0000;
  • 4d398a2 fix bug in construction of NChannelSet by Rob Scharp <rscharpf@jhsph.edu> 2013-10-31 01:45:34 +0000;
  • 34a5a07 merge with upstream change made at bioc by Rob Scharp <rscharpf@jhsph.edu> 2013-10-31 01:45:27 +0000;
  • dfcb149 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 9d4be8a Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 291177d bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 1d875d3 merge with collab by Rob Scharp <rscharpf@jhsph.edu> 2013-10-01 12:03:56 +0000;
  • ba1a7d7 fix conflict in description by Rob Scharp <rscharpf@jhsph.edu> 2013-09-30 14:07:17 +0000;
  • 71f28ae fix syntax error by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-08-16 22:34:26 +0000;
  • 808cfec merging from collab by Rob Scharp <rscharpf@jhsph.edu> 2013-07-31 01:37:34 +0000;
  • a963512 bumped version by Rob Scharp <rscharpf@jhsph.edu> 2013-05-30 17:42:28 +0000;
  • 1f03560 bump version number from svn repo by Rob Scharp <rscharpf@jhsph.edu> 2013-05-30 17:37:29 +0000;
  • 0927085 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • d0a1950 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • 97d66e0 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 2a5b6e2 update namespace by Rob Scharp <rscharpf@jhsph.edu> 2013-01-23 05:14:35 +0000;
  • 3ad9a18 merge local changes with dan's changes on bioc by Rob Scharp <rscharpf@jhsph.edu> 2013-01-20 18:31:47 +0000;
  • d6fd371 run texi2dvi with R CMD to avoid windows build error by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-01-08 20:00:26 +0000;
  • fc2e445 @<- has been moved from methods to base, so it no longer needs to be imported in package NAMESPACEs. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-01-04 21:18:09 +0000;
  • efaf217 (origin/RELEASE_2_11, RELEASE_2_11) merge collab_release by Rob Scharp <rscharpf@jhsph.edu> 2012-11-21 14:32:51 +0000;
  • 5b0470a merge collab branch by Rob Scharp <rscharpf@jhsph.edu> 2012-11-19 04:49:34 +0000;
  • 8d2ba73 Fix table in CopyNumberOverview.Rnw by Rob Scharp <rscharpf@jhsph.edu> 2012-11-19 04:33:45 +0000;
  • a3b625d merge with collab branch containing fix for dqrls and bug-fix for computeRBaf that can misalign sample index with batch index (when batch is not in alphabetical order) by Rob Scharp <rscharpf@jhsph.edu> 2012-11-17 15:24:46 +0000;
  • 24ff6a0 remove reference to AffymetrixPreprocessCN.Rnw vignette in copynumber.Rnw file by Rob Scharp <rscharpf@jhsph.edu> 2012-11-13 20:03:34 +0000;
  • e34f6c9 Update CopyNumberOverview and Infratructure vignettes by Rob Scharp <rscharpf@jhsph.edu> 2012-11-13 19:59:49 +0000;
  • 44a8cc2 bump version by Rob Scharp <rscharpf@jhsph.edu> 2012-11-02 00:21:09 +0000;
  • 22d6a37 merge fix for genotype function by Rob Scharp <rscharpf@jhsph.edu> 2012-11-02 00:21:02 +0000;
  • ea8dfe7 annotation packages by Rob Scharp <rscharpf@jhsph.edu> 2012-10-23 13:58:56 +0000;