Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.5.37
Date: 2010-02-05
Author: Rafael A Irizarry, Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>
Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.11.0),
         methods,
         Biobase (>= 2.7.2),
         oligoClasses (>= 1.9.35)
Imports: affyio (>= 1.15.2),
         preprocessCore,
         utils,
         stats,
         genefilter,
         splines,
         mvtnorm,
         ellipse,
         SNPchip,ff
Suggests: hapmapsnp5,
          hapmapsnp6,
          genomewidesnp5Crlmm (>= 1.0.2),
          genomewidesnp6Crlmm (>= 1.0.2),
          snpMatrix,
          metaArray
Collate: AllGenerics.R
	 AllClasses.R
	 methods-CNSet.R
	 methods-eSet.R
         methods-SnpSuperSet.R
         cnrma-functions.R
         crlmm-functions.R
         crlmm-illumina.R
	 snprma-functions.R
         utils.R
         zzz.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics, CopyNumberVariants