1. crlmm
  2. R
  3. zzz.R
Browse code

merge local changes with dan's changes on bioc

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@72708 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 20/01/2013 18:31:47
Showing 1 changed files
R/zzz.R
History View file @ 3ad9a18
... ... 
@@ -1,10 +1,6 @@
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 # Loading required libraries
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 THISPKG <- "crlmm"
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-##.onLoad <- function(libname, pkgname) {
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-##	require("methods")
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-##}
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-
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 .onAttach <- function(libname, pkgname) {
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 	packageStartupMessage("Welcome to crlmm version ", packageDescription(THISPKG, fields="Version"))
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 }
Browse code

Merge branch 'collab'

* collab:
update cnSet objects in data/
bump version
update version dependencies
coerce copy number and bafs to integer matrix in setAs(CNSet, oligoSnpSet)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@63707 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 10/03/2012 00:05:37
Showing 1 changed files
R/zzz.R
History View file @ 621f08e
... ... 
@@ -6,7 +6,7 @@ THISPKG <- "crlmm"
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 ##}
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 .onAttach <- function(libname, pkgname) {
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-	packageStartupMessage("Welcome to crlmm version ", packageDescription(THISPKG, field="Version"))
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+	packageStartupMessage("Welcome to crlmm version ", packageDescription(THISPKG, fields="Version"))
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 }
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 .onUnload <- function( libpath ){
Browse code

Update zzz.R to use packageStartupMessage. Bug fix in copynumberAccessors Rd file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58648 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 01/10/2011 04:48:50
Showing 1 changed files
R/zzz.R
History View file @ f8f2b80
... ... 
@@ -1,11 +1,14 @@
1 1 
 # Loading required libraries
2 2 
 THISPKG <- "crlmm"
3 
-.onLoad <- function(libname, pkgname) {
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-	require("methods")
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-}
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+
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+##.onLoad <- function(libname, pkgname) {
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+##	require("methods")
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+##}
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+
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 .onAttach <- function(libname, pkgname) {
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-  message("Welcome to crlmm version ", packageDescription(THISPKG, field="Version"))
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+	packageStartupMessage("Welcome to crlmm version ", packageDescription(THISPKG, field="Version"))
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 }
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+
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 .onUnload <- function( libpath ){
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 	library.dynam.unload(THISPKG, libpath)
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 }
Browse code

commit after bioc rebase

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@52859 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 16/02/2011 16:19:11
Showing 1 changed files
R/zzz.R
History View file @ 453e688
... ... 
@@ -1,14 +1,11 @@
1 1 
 # Loading required libraries
2 2 
 THISPKG <- "crlmm"
3 
-
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 .onLoad <- function(libname, pkgname) {
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 	require("methods")
6 5 
 }
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-
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 .onAttach <- function(libname, pkgname) {
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   message("Welcome to crlmm version ", packageDescription(THISPKG, field="Version"))
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 }
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-
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 .onUnload <- function( libpath ){
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 	library.dynam.unload(THISPKG, libpath)
14 11 
 }
Browse code

Replace match.fun with get.

I got errors using match.fun(functionName) when functionName was not
exported. However, get(functionName) seems to work

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@49147 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 30/08/2010 19:41:22
Showing 1 changed files
R/zzz.R
History View file @ a070e5b
... ... 
@@ -2,7 +2,7 @@
2 2 
 THISPKG <- "crlmm"
3 3
4 4 
 .onLoad <- function(libname, pkgname) {
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-  require("methods")
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+	require("methods")
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 }
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8 8 
 .onAttach <- function(libname, pkgname) {
Browse code

added functions for copy number analysis (not yet documented). Added copynumber vignette

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@37630 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 27/02/2009 13:06:31
Showing 1 changed files
R/zzz.R
History View file @ eb5b9c7
... ... 
@@ -10,7 +10,6 @@ THISPKG <- "crlmm"
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 }
11 11
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 .onUnload <- function( libpath ){
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-  library.dynam.unload(THISPKG, libpath)
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+	library.dynam.unload(THISPKG, libpath)
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 }
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-
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-  .crlmmPkgEnv <- new.env(parent=emptyenv())
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+.crlmmPkgEnv <- new.env(parent=emptyenv())
Browse code

Adding crlmm package

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@36653 bc3139a8-67e5-0310-9ffc-ced21a209358

Benilton Carvalho authored on 14/01/2009 22:00:52
Showing 1 changed files
R/zzz.R
History View file @ 6a21844
1 1 
new file mode 100644
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@@ -0,0 +1,16 @@
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+# Loading required libraries
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+THISPKG <- "crlmm"
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+
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+.onLoad <- function(libname, pkgname) {
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+  require("methods")
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+}
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+
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+.onAttach <- function(libname, pkgname) {
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+  message("Welcome to crlmm version ", packageDescription(THISPKG, field="Version"))
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+}
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+
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+.onUnload <- function( libpath ){
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+  library.dynam.unload(THISPKG, libpath)
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+}
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+
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+  .crlmmPkgEnv <- new.env(parent=emptyenv())