1. crlmm
  2. src
  3. crlmm.h
Browse code

fix conflict in description

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@80947 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 30/09/2013 14:07:17
Showing 1 changed files
src/crlmm.h
History View file @ ba1a7d7
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old mode 100644
2 2 
new mode 100755
... ... 
@@ -12,3 +12,15 @@ SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *);
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 SEXP normalizeBAF(SEXP *, SEXP *);
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+
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+SEXP krlmmComputeM(SEXP *, SEXP *);
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+
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+SEXP krlmmComputeS(SEXP *, SEXP *);
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+
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+SEXP readGenCallOutputCFunc(SEXP *, SEXP *, SEXP *, SEXP *, SEXP *, SEXP *, SEXP *, SEXP *);
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+
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+SEXP krlmmConfidenceScore(SEXP *, SEXP *);
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+
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+SEXP krlmmHardyweinberg(SEXP *);
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+
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+SEXP countFileLines(SEXP *);
Browse code

bugfix: normalizeBAF not registered

Fixed registering of normalizeBAF; the wrapper for it, in R, is
getBAF().

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58758 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 04/10/2011 16:11:36
Showing 1 changed files
src/crlmm.h
History View file @ 92748f8
... ... 
@@ -12,4 +12,3 @@ SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *);
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 SEXP normalizeBAF(SEXP *, SEXP *);
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-
Browse code

crlmm on github

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58751 bc3139a8-67e5-0310-9ffc-ced21a209358

Rob Scharp authored on 04/10/2011 16:11:02
Showing 1 changed files
src/crlmm.h
History View file @ af08b5d
... ... 
@@ -12,3 +12,4 @@ SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *);
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 SEXP normalizeBAF(SEXP *, SEXP *);
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+
Browse code

bringing changes from GitHub; from now on, keeping code on BioC servers

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@58710 bc3139a8-67e5-0310-9ffc-ced21a209358

Benilton Carvalho authored on 03/10/2011 18:12:55
Showing 1 changed files
src/crlmm.h
History View file @ b6f0c38
... ... 
@@ -10,3 +10,5 @@ SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *, SEXP *,
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 		      SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *);
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+
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+SEXP normalizeBAF(SEXP *, SEXP *);
Browse code

Removed unneeded C-code and cleaned some crlmm functions

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@42999 bc3139a8-67e5-0310-9ffc-ced21a209358

Benilton Carvalho authored on 14/11/2009 17:26:14
Showing 1 changed files
src/crlmm.h
History View file @ 10632b3
... ... 
@@ -1,30 +1,6 @@
1 1 
 #include <R.h>
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 #include <Rinternals.h>
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-
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-SEXP gtypeCallerPart1nm(SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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-		        SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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-                        SEXP *, SEXP *, SEXP *);
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-
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-SEXP gtypeCallerPart2nm(SEXP *, SEXP *, SEXP *, SEXP *,
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-		      SEXP *, SEXP *, SEXP *, SEXP *,
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-                      SEXP *, SEXP *, SEXP *, SEXP *,
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-		      SEXP *, SEXP *, SEXP *, SEXP *,
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-                      SEXP *, SEXP *, SEXP *);
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-
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-SEXP test (SEXP *);
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-
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-SEXP gtypeCallerPart1NormalNoN(SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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-                               SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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-		               SEXP *, SEXP *, SEXP *, SEXP *,SEXP *);
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-
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-SEXP gtypeCallerPart2NormalNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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-		      SEXP *, SEXP *, SEXP *, SEXP *,
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-                      SEXP *, SEXP *, SEXP *, SEXP *,
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-		      SEXP *, SEXP *, SEXP *, SEXP *,
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-                      SEXP *, SEXP *, SEXP *);
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-
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-
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 SEXP gtypeCallerPart1(SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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 		      SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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 		      SEXP *, SEXP *, SEXP *, SEXP *,SEXP *);
... ... 
@@ -34,16 +10,3 @@ SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *, SEXP *,
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 		      SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *);
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-
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-SEXP gtypeCallerPart1TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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-		          SEXP *, SEXP *, SEXP *, SEXP *,
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-                          SEXP *, SEXP *, SEXP *, SEXP *,
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-		          SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *);
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-
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-
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-SEXP gtypeCallerPart2TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *, SEXP *);
Browse code

Fixing registration of C functions

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@36711 bc3139a8-67e5-0310-9ffc-ced21a209358

Benilton Carvalho authored on 16/01/2009 12:52:10
Showing 1 changed files
src/crlmm.h
History View file @ a0b9555
... ... 
@@ -6,6 +6,11 @@ SEXP gtypeCallerPart1nm(SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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 		        SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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                         SEXP *, SEXP *, SEXP *);
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+SEXP gtypeCallerPart2nm(SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *);
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 SEXP test (SEXP *);
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... ... 
@@ -13,6 +18,17 @@ SEXP gtypeCallerPart1NormalNoN(SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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                                SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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 		               SEXP *, SEXP *, SEXP *, SEXP *,SEXP *);
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+SEXP gtypeCallerPart2NormalNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *);
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+
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+
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+SEXP gtypeCallerPart1(SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,SEXP *);
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+
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 SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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 		      SEXP *, SEXP *, SEXP *, SEXP *,
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                       SEXP *, SEXP *, SEXP *, SEXP *,
... ... 
@@ -23,11 +39,11 @@ SEXP gtypeCallerPart1TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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 		          SEXP *, SEXP *, SEXP *, SEXP *,
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                           SEXP *, SEXP *, SEXP *, SEXP *,
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 		          SEXP *, SEXP *, SEXP *,
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-		      SEXP *, SEXP *)
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+			  SEXP *, SEXP *);
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 SEXP gtypeCallerPart2TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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 			  SEXP *, SEXP *, SEXP *, SEXP *,
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 			  SEXP *, SEXP *, SEXP *, SEXP *,
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 			  SEXP *, SEXP *, SEXP *, SEXP *,
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-			  SEXP *, SEXP *, SEXP *)
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\ No newline at end of file
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+			  SEXP *, SEXP *, SEXP *);
Browse code

Added registration for C functions

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@36696 bc3139a8-67e5-0310-9ffc-ced21a209358

Nishant Gopalakrishnan authored on 16/01/2009 00:50:49
Showing 1 changed files
src/crlmm.h
History View file @ 0710eb7
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,33 @@
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+#include <R.h>
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+#include <Rinternals.h>
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+
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+
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+SEXP gtypeCallerPart1nm(SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+		        SEXP *, SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+                        SEXP *, SEXP *, SEXP *);
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+
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+
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+SEXP test (SEXP *);
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+
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+SEXP gtypeCallerPart1NormalNoN(SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+                               SEXP *, SEXP *, SEXP *, SEXP *,SEXP *, SEXP *,
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+		               SEXP *, SEXP *, SEXP *, SEXP *,SEXP *);
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+
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+SEXP gtypeCallerPart2(SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *, SEXP *, SEXP *,
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+                      SEXP *, SEXP *, SEXP *);
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+
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+SEXP gtypeCallerPart1TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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+		          SEXP *, SEXP *, SEXP *, SEXP *,
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+                          SEXP *, SEXP *, SEXP *, SEXP *,
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+		          SEXP *, SEXP *, SEXP *,
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+		      SEXP *, SEXP *)
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+
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+
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+SEXP gtypeCallerPart2TNoN(SEXP *, SEXP *, SEXP *, SEXP *,
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+			  SEXP *, SEXP *, SEXP *, SEXP *,
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+			  SEXP *, SEXP *, SEXP *, SEXP *,
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+			  SEXP *, SEXP *, SEXP *, SEXP *,
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+			  SEXP *, SEXP *, SEXP *)
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\ No newline at end of file