Bioconductor Code: Browse

August 30, 2010

	Viewa070e5b Replace match.fun with get. Rob Scharp authored on 30/08/2010 19:41:22
	View56b783e Revised accesors in methods-AssayData -- some of the conflicts resolved by hand during rebase were incorrect Rob Scharp authored on 30/08/2010 19:41:03
	View0198a9a Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette Rob Scharp authored on 30/08/2010 19:40:42
	View3e4db4b constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ... Rob Scharp authored on 30/08/2010 19:40:33

August 21, 2010

	View1715856 A few edits to copynumber vignette and sample.CNSetLM Rd file Rob Scharp authored on 21/08/2010 02:50:25
	View6b75ec7 Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.R Rob Scharp authored on 21/08/2010 02:50:15
	Viewdf2226f Changed totalCopyNumber to totalCopynumber to be consistent with caps in crlmmCopynumber. Fixed a few bugs in the .Rd files Rob Scharp authored on 21/08/2010 02:50:10
	View66900fe Edits to CA,CB, ACN accessors for copy number Rob Scharp authored on 21/08/2010 02:50:05
	Viewada0da1 commented replacement method for snpCallProbability. Rob Scharp authored on 21/08/2010 02:50:00
	View6846d58 Numerous changed to copy number estimation detailed below. Rob Scharp authored on 21/08/2010 02:49:54
	Viewd08acba A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object. Rob Scharp authored on 21/08/2010 02:49:47
	View33a5ea6 Added methods for flags and flags<-. Added 'flags' as an element to the LinearModelParameter object Rob Scharp authored on 21/08/2010 02:49:41
	Viewc45787d Renamed computeCN crlmmCopynumber Rob Scharp authored on 21/08/2010 02:49:37
	View8800496 Removed args normal and snpflags from fit.lm* functions. Removed code that initializes the flag and snpflag matrices in computeCN Rob Scharp authored on 21/08/2010 02:49:34