November 11, 2010
Viewf3d4014

genotype function should be independent of annotation package version

Rob Scharp authored on 11/11/2010 04:13:23
View4191b5f

Bug fix for estimation of copy number at nonpolymorphic loci on chromosome X.

Rob Scharp authored on 11/11/2010 04:13:08
View3f40458

getFeatureData only returns features with chromosome annotation

Rob Scharp authored on 11/11/2010 04:13:03
October 20, 2010
View94bdc2e

import ffdf class from oligoClasses

Rob Scharp authored on 20/10/2010 13:43:26
View73fd737

Update summarizeNps function for illumina platform

Rob Scharp authored on 20/10/2010 13:43:06
October 4, 2010
View6a6b67c

Remove help file for ffdf-class. Adding documentation for CNSet accessors.

Rob Scharp authored on 04/10/2010 02:21:59
August 30, 2010
View7799caf

importing ff_matrix class from oligoClasses

Rob Scharp authored on 30/08/2010 19:41:12
View12e6763

more pruning of NAMESPACE

Rob Scharp authored on 30/08/2010 19:41:10
Viewc6d091f

cleaned some of the temporary exports in the namespace

Rob Scharp authored on 30/08/2010 19:41:08
View56b783e

Revised accesors in methods-AssayData -- some of the conflicts resolved by hand during rebase were incorrect

Rob Scharp authored on 30/08/2010 19:41:03
Viewd5b39e2

CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN function

Rob Scharp authored on 30/08/2010 19:40:54
View0198a9a

Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette

Rob Scharp authored on 30/08/2010 19:40:42
View3e4db4b

constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ...

Rob Scharp authored on 30/08/2010 19:40:33
View52e58a4

Export plotCNSetLM for debugging.

Rob Scharp authored on 30/08/2010 19:40:28
View630adba

Exporting list and ffdf classes so that lM<- assignment works

Rob Scharp authored on 30/08/2010 19:40:16