March 30, 2011
Viewf0f8ba1

Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:07
March 18, 2011
Viewac7e0c8

remove callSet from genotype.Illumina args

Rob Scharp authored on 18/03/2011 01:57:35
Viewcfa9fbb

Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.

Rob Scharp authored on 18/03/2011 01:57:30
Viewd878c18

genotype.Illumina only supports ff. no matrix option

Rob Scharp authored on 18/03/2011 01:57:25
Viewedc69ca

Remove argument 'sel' from processIDAT and replace with 'stratum' and 'sampleBatches'

Rob Scharp authored on 18/03/2011 01:57:20
View808d8cb

bug fix in for loop

Rob Scharp authored on 18/03/2011 01:57:16
View802ca70

took out calls to ffcolapply in genotype.Illumina and processIDAT

Rob Scharp authored on 18/03/2011 01:57:11
Viewdd44a16

add scale.sd option to computePosteriorMeans

Rob Scharp authored on 18/03/2011 01:57:07
View740c93c

Fix bug in shrinkGenotypeSummaries for batch.index

Rob Scharp authored on 18/03/2011 01:57:02
View86e551f

fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packages

Rob Scharp authored on 18/03/2011 01:56:56
March 12, 2011
Viewe1b7a24

removed object files in src/ that were accidentally added to version control

Rob Scharp authored on 12/03/2011 19:58:45
View99544ab

add alias for 'cnSet'

Rob Scharp authored on 12/03/2011 19:56:12
View5ca9422

fix version number

Rob Scharp authored on 12/03/2011 19:56:08
Viewa0b5fda

change cnSet$SNR and cnSet$SKW to numeric (previously ff)

Rob Scharp authored on 12/03/2011 19:56:02
March 10, 2011
Viewfd149ed

update sample.CNSet

Rob Scharp authored on 10/03/2011 19:31:11