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View 4c4e930
Add calculateRBaf method
Rob Scharp authored on 01/10/2011 04:50:37
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View 7818b53
Remove snpNames method and generic
Rob Scharp authored on 01/10/2011 04:50:30
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View 301fb7d
Removed 'signed=FALSE' argument from readBin() calls in readIDAT() and readBMP() is cases where the 'size' argument is greater than 2 [apparently this produces a warning in the devel version or R - problem reported by Kasper Daniel Hansen]
Rob Scharp authored on 01/10/2011 04:50:24
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View 893d23a
update imputeGender (add args for SNR and SNRMin)
Rob Scharp authored on 01/10/2011 04:50:19
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View 4c0f34d
Edit genotypeAffy wrapper for crlmmGT2 (snp.names no longer an argument to crlmmGT2)
Rob Scharp authored on 01/10/2011 04:50:12
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View d0d8339
Make API for crlmmGT2 the same as crlmmGT. Define snpNames method for 'character'.
Rob Scharp authored on 01/10/2011 04:50:07
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View bd99a58
Remove predictGender. Add imputeGender. crlmmGT and crlmmGT2 call imputeGender
Rob Scharp authored on 01/10/2011 04:49:56
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View e95fbc1
Use ratio of SNP intensities on chromosomes X and Y to impute gender. Modifications in crlmmGT2 and crlmmGT.
Rob Scharp authored on 01/10/2011 04:49:50
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View 6fbd248
Add methods-PredictionRegion.R. Contains '[' method for PredictionRegion class
Rob Scharp authored on 01/10/2011 04:49:44
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View 16b9de7
Edits to xyplot example
Rob Scharp authored on 01/10/2011 04:49:37
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View 97a2ac4
Use original version of bivariateCenter.
Rob Scharp authored on 01/10/2011 04:49:31
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View dd7ad7b
Add Lynn's calculateBAFandLRR function -- not exported
Rob Scharp authored on 01/10/2011 04:49:26
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View cd6d42f
Add PredictionRegion class that contains 'list'. Export in NAMESPACE. predictionRegion returns PredictionRegion class.
Rob Scharp authored on 01/10/2011 04:49:20
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View b398d6f
Update posteriorProbability for handling nonpolymorphic markers
Rob Scharp authored on 01/10/2011 04:49:02
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