February 16, 2011
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fix for finding index of nonpolymorphic markers in genotype function

Rob Scharp authored on 16/02/2011 15:58:14
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Fix writing of genotypes and confidence scores using ffcolapply

Rob Scharp authored on 16/02/2011 15:58:10
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update processCEL2 -- only read intensities for NP probes that are included in the npProbesFid object

Rob Scharp authored on 16/02/2011 15:58:06
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Bug in copy number accessors fixed.

Rob Scharp authored on 16/02/2011 15:56:57
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Fix bug in CB accessor for nonpolymorphic markers

Rob Scharp authored on 16/02/2011 15:56:52
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fix for finding index of nonpolymorphic markers in genotype function

Rob Scharp authored on 16/02/2011 15:56:48
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Fix writing of genotypes and confidence scores using ffcolapply

Rob Scharp authored on 16/02/2011 15:56:43
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update processCEL2 -- only read intensities for NP probes that are included in the npProbesFid object

Rob Scharp authored on 16/02/2011 15:56:39
November 15, 2010
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added GT.CONF.THR argument to crlmmCopynumber

Rob Scharp authored on 15/11/2010 14:24:37
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Added colors for men/women for chrom X boxplots in copynumber vignette

Rob Scharp authored on 15/11/2010 14:24:29
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Updated copynumber and illumina_copynumber vignettes for v1.9.6

Rob Scharp authored on 15/11/2010 14:24:02
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cn marker 'CN_974939' is not part of the npProbesFid annotation file in genomewidesnp6Crlmm. Exclude this marker when tallying the number of NAs for the nonpolymorphic markers on chromosome X.

Rob Scharp authored on 15/11/2010 14:23:08
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Finalize updates to copynumber and illumina_copynumber vignettes for v1.8.3 updates

Rob Scharp authored on 15/11/2010 14:22:42
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Bug in copy number accessors fixed.

Rob Scharp authored on 15/11/2010 14:21:58
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Fix bug in CB accessor for nonpolymorphic markers

Rob Scharp authored on 15/11/2010 14:21:52