August 21, 2010
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Numerous changed to copy number estimation detailed below.

Rob Scharp authored on 21/08/2010 02:49:54
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A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
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begin commening the 'normal' matrix as this is not used.

Rob Scharp authored on 21/08/2010 02:49:25
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Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition

Rob Scharp authored on 21/08/2010 02:49:06
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Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.

Rob Scharp authored on 21/08/2010 02:48:57
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Added Ingo to the crlmm authorship. Moved Rafa to the last position.

Rob Scharp authored on 21/08/2010 02:48:43
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v1.7.11 removed 'copyNumber' method from methods-CNSet.R.

Rob Scharp authored on 21/08/2010 02:47:41
August 2, 2010
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Added constructIlluminaFeatureData and constructIlluminaAssayData to cnrma-functions

Rob Scharp authored on 02/08/2010 08:52:11
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v 1.7.8 updated changes/description

Rob Scharp authored on 02/08/2010 08:51:59
July 28, 2010
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git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@48480 bc3139a8-67e5-0310-9ffc-ced21a209358

unknown authored on 28/07/2010 02:03:14
July 25, 2010
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git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@48398 bc3139a8-67e5-0310-9ffc-ced21a209358

unknown authored on 25/07/2010 04:42:43
May 29, 2010
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minor edits to copynumber.Rnw

Rob Scharp authored on 29/05/2010 03:30:32
May 25, 2010
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wrapped readIDAT in a tryCatch

Rob Scharp authored on 25/05/2010 19:20:33
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added plot-methods.R. Added back a versionNumber check (from r45050) in crlmm-illumina.R

Rob Scharp authored on 25/05/2010 17:47:57
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updated copynumber vignette in inst/scripts. Added example datasets

Rob Scharp authored on 25/05/2010 13:07:43