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View 24da8d2
Fixed bug in call to fit.wls from fit.lm3. Added Ns argument.
Rob Scharp authored on 21/08/2010 02:48:46
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View 3c6c270
Added Ingo to the crlmm authorship. Moved Rafa to the last position.
Rob Scharp authored on 21/08/2010 02:48:43
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View b408521
removed weighted.lm option for crlmmCopynumber
Rob Scharp authored on 21/08/2010 02:48:39
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View 9c2244b
commented all of the old crlmmCopynumber code. Starting to move crlmmCopynumberLD.
Rob Scharp authored on 21/08/2010 02:48:35
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View 2551de7
changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.
Rob Scharp authored on 21/08/2010 02:48:31
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View 805ca33
added ACN method in methods-CNSet.R. CA and CB call ACN.
Rob Scharp authored on 21/08/2010 02:48:26
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View ddc94a5
commented gc() calls
Rob Scharp authored on 21/08/2010 02:48:21
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View 2c958cf
Changed generic for CA and CB to include index i for markers and index j for samples
Rob Scharp authored on 21/08/2010 02:48:17
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View 481f470
added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)
Rob Scharp authored on 21/08/2010 02:48:14
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View 752632c
added totalCopyNumber method to methods-CNSet (removed from oligoClasses)
Rob Scharp authored on 21/08/2010 02:48:11
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View 63fb6e4
Added CA, CB methods to methods-CNSet.R
Rob Scharp authored on 21/08/2010 02:48:08
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View 88f551c
commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions
Rob Scharp authored on 21/08/2010 02:48:04
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View c5305d8
changed 'batches' to 'sample.strata' in genotype function to avoid confusion
Rob Scharp authored on 21/08/2010 02:48:00
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View 9df4128
Commented CA<- assignment in fit.lm4 (chr X nonpolymorphic markers)
Rob Scharp authored on 21/08/2010 02:47:57
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View 45ec15f
Commented CA<- CB<- assigments in fit.lm3 function (chr X polymorphic markers)
Rob Scharp authored on 21/08/2010 02:47:54
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