August 21, 2010
Viewd08acba

A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
Viewe63564b

begin commening the 'normal' matrix as this is not used.

Rob Scharp authored on 21/08/2010 02:49:25
View3c6c270

Added Ingo to the crlmm authorship. Moved Rafa to the last position.

Rob Scharp authored on 21/08/2010 02:48:43
Viewb408521

removed weighted.lm option for crlmmCopynumber

Rob Scharp authored on 21/08/2010 02:48:39
View9c2244b

commented all of the old crlmmCopynumber code. Starting to move crlmmCopynumberLD.

Rob Scharp authored on 21/08/2010 02:48:35
View2551de7

changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.

Rob Scharp authored on 21/08/2010 02:48:31
View805ca33

added ACN method in methods-CNSet.R. CA and CB call ACN.

Rob Scharp authored on 21/08/2010 02:48:26
Viewddc94a5

commented gc() calls

Rob Scharp authored on 21/08/2010 02:48:21
View88f551c

commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions

Rob Scharp authored on 21/08/2010 02:48:04
View9dfdcb6

Commented all of the cA, cB and CA(object) <- CB(object)<- assignments in lm.fit1 function

Rob Scharp authored on 21/08/2010 02:47:48
View5a23c45

Commented out computation of standard errors for coefficients. Replaced crossprod(solve...) with call to the Fortran library dqrls

Rob Scharp authored on 21/08/2010 02:47:35
View518a290

Added accessors for linear model parameters.

Rob Scharp authored on 21/08/2010 02:47:15
May 29, 2010
View79d5de3

minor edits to copynumber.Rnw

Rob Scharp authored on 29/05/2010 03:30:32
May 25, 2010
Viewa097b91

updated copynumber vignette in inst/scripts. Added example datasets

Rob Scharp authored on 25/05/2010 13:07:43
January 12, 2010
View50f393b

updated copy number vignette. this version was used in the methods manuscript.

Rob Scharp authored on 12/01/2010 16:00:31