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View d08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.
Rob Scharp authored on 21/08/2010 02:49:47
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View e63564b
begin commening the 'normal' matrix as this is not used.
Rob Scharp authored on 21/08/2010 02:49:25
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View 3c6c270
Added Ingo to the crlmm authorship. Moved Rafa to the last position.
Rob Scharp authored on 21/08/2010 02:48:43
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View b408521
removed weighted.lm option for crlmmCopynumber
Rob Scharp authored on 21/08/2010 02:48:39
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View 9c2244b
commented all of the old crlmmCopynumber code. Starting to move crlmmCopynumberLD.
Rob Scharp authored on 21/08/2010 02:48:35
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View 2551de7
changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.
Rob Scharp authored on 21/08/2010 02:48:31
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View 805ca33
added ACN method in methods-CNSet.R. CA and CB call ACN.
Rob Scharp authored on 21/08/2010 02:48:26
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View ddc94a5
commented gc() calls
Rob Scharp authored on 21/08/2010 02:48:21
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View 88f551c
commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions
Rob Scharp authored on 21/08/2010 02:48:04
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View 9dfdcb6
Commented all of the cA, cB and CA(object) <- CB(object)<- assignments in lm.fit1 function
Rob Scharp authored on 21/08/2010 02:47:48
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View 5a23c45
Commented out computation of standard errors for coefficients. Replaced crossprod(solve...) with call to the Fortran library dqrls
Rob Scharp authored on 21/08/2010 02:47:35
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View 518a290
Added accessors for linear model parameters.
Rob Scharp authored on 21/08/2010 02:47:15
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View 1737881
Edited Makefile as in Peng's compendium
Rob Scharp authored on 21/08/2010 02:47:07
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