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Viewd08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.
Rob Scharp authored on 21/08/2010 02:49:47
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Viewe63564b
begin commening the 'normal' matrix as this is not used.
Rob Scharp authored on 21/08/2010 02:49:25
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View69ec864
Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.
Rob Scharp authored on 21/08/2010 02:49:14
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View8160162
Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition
Rob Scharp authored on 21/08/2010 02:49:06
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View97e84a8
Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.
Rob Scharp authored on 21/08/2010 02:48:57
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View2551de7
changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.
Rob Scharp authored on 21/08/2010 02:48:31
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View805ca33
added ACN method in methods-CNSet.R. CA and CB call ACN.
Rob Scharp authored on 21/08/2010 02:48:26
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Viewddc94a5
commented gc() calls
Rob Scharp authored on 21/08/2010 02:48:21
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View2c958cf
Changed generic for CA and CB to include index i for markers and index j for samples
Rob Scharp authored on 21/08/2010 02:48:17
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View752632c
added totalCopyNumber method to methods-CNSet (removed from oligoClasses)
Rob Scharp authored on 21/08/2010 02:48:11
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View63fb6e4
Added CA, CB methods to methods-CNSet.R
Rob Scharp authored on 21/08/2010 02:48:08
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View88f551c
commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions
Rob Scharp authored on 21/08/2010 02:48:04
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Viewbf24450
v1.7.11 removed 'copyNumber' method from methods-CNSet.R.
Rob Scharp authored on 21/08/2010 02:47:41
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View76f72a5
Fixed bug in fit.lm functions -- the correlations were assigned incorrectly.
Rob Scharp authored on 21/08/2010 02:47:23
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View518a290
Added accessors for linear model parameters.
Rob Scharp authored on 21/08/2010 02:47:15
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