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View d08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.Rob Scharp authored on 21/08/2010 02:49:47 |
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View 69ec864
Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.Rob Scharp authored on 21/08/2010 02:49:14 |
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View 8160162
Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definitionRob Scharp authored on 21/08/2010 02:49:06 |
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View 97e84a8
Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.Rob Scharp authored on 21/08/2010 02:48:57 |
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View 2c958cf
Changed generic for CA and CB to include index i for markers and index j for samplesRob Scharp authored on 21/08/2010 02:48:17 |
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View 481f470
added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)Rob Scharp authored on 21/08/2010 02:48:14 |
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View 518a290
Added accessors for linear model parameters.Rob Scharp authored on 21/08/2010 02:47:15 |
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View b9ad9e2
removed plotCNSetLM function and plot method. Added linesCNSetLM function and lines method.Rob Scharp authored on 02/08/2010 08:51:48 |
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View adde216
Manually removed conflicts with my branch and Matt Ritchie's commit that had a bug fig for v 1.7.6Rob Scharp authored on 02/08/2010 08:51:34 |
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View d5bc779
added genotype2 and crlmmCopynumber2Rob Scharp authored on 02/04/2010 03:03:19 |
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View c00f715
updates to genotype, crlmmIlluminaRS, and crlmmCopynumberRob Scharp authored on 25/03/2010 13:01:51 |
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View 1c2a3f4
fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions functionRob Scharp authored on 18/03/2010 12:19:14 |
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View a333524
updated description, added AllClasses.RRob Scharp authored on 10/03/2010 14:53:53 |
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View 5fcfed7
roll back to crlmm version 1.5.24Rob Scharp authored on 10/03/2010 01:27:04 |
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View a13f66d
several updates for ff. new classes for affy/illumina processing. More s4-style codeRob Scharp authored on 08/03/2010 04:46:55 |