August 21, 2010
Viewd08acba

A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
View69ec864

Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.

Rob Scharp authored on 21/08/2010 02:49:14
View8160162

Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition

Rob Scharp authored on 21/08/2010 02:49:06
View97e84a8

Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.

Rob Scharp authored on 21/08/2010 02:48:57
View2c958cf

Changed generic for CA and CB to include index i for markers and index j for samples

Rob Scharp authored on 21/08/2010 02:48:17
View481f470

added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:14
View518a290

Added accessors for linear model parameters.

Rob Scharp authored on 21/08/2010 02:47:15
August 2, 2010
Viewb9ad9e2

removed plotCNSetLM function and plot method. Added linesCNSetLM function and lines method.

Rob Scharp authored on 02/08/2010 08:51:48
Viewadde216

Manually removed conflicts with my branch and Matt Ritchie's commit that had a bug fig for v 1.7.6

Rob Scharp authored on 02/08/2010 08:51:34
April 2, 2010
Viewd5bc779

added genotype2 and crlmmCopynumber2

Rob Scharp authored on 02/04/2010 03:03:19
March 25, 2010
Viewc00f715

updates to genotype, crlmmIlluminaRS, and crlmmCopynumber

Rob Scharp authored on 25/03/2010 13:01:51
March 18, 2010
View1c2a3f4

fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions function

Rob Scharp authored on 18/03/2010 12:19:14
March 10, 2010
Viewa333524

updated description, added AllClasses.R

Rob Scharp authored on 10/03/2010 14:53:53
View5fcfed7

roll back to crlmm version 1.5.24

Rob Scharp authored on 10/03/2010 01:27:04
March 8, 2010
Viewa13f66d

several updates for ff. new classes for affy/illumina processing. More s4-style code

Rob Scharp authored on 08/03/2010 04:46:55