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Commented out computation of standard errors for coefficients. Replaced crossprod(solve...) with call to the Fortran library dqrlsRob Scharp authored on 21/08/2010 02:47:35 |
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commented sums of squared residuals calculation in nuphiAllele2.Rob Scharp authored on 21/08/2010 02:47:30 |
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Added weighted.lm argument to fit.lm1, fit.lm2 and computeCN. Added computeCN.Rob Scharp authored on 21/08/2010 02:47:27 |
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Fixed bug in fit.lm functions -- the correlations were assigned incorrectly.Rob Scharp authored on 21/08/2010 02:47:23 |
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Added accessors for linear model parameters.Rob Scharp authored on 21/08/2010 02:47:15 |
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Intermediate files are loaded within the constructIlluminaCNSet function.Rob Scharp authored on 02/08/2010 08:52:18 |
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Exporting crlmmIllumina2. Added constructIlluminaCNSet function.Rob Scharp authored on 02/08/2010 08:52:15 |
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Added constructIlluminaFeatureData and constructIlluminaAssayData to cnrma-functionsRob Scharp authored on 02/08/2010 08:52:11 |
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Assign column names to ff object assay data elements prior to contructing CNSetLMRob Scharp authored on 02/08/2010 08:51:57 |
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genotype and genotypeLD have copynumber=TRUE as default.Rob Scharp authored on 02/08/2010 08:51:54 |
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Edits to construct function. phenoData is instantiated prior to initializing the CNSetLM object.Rob Scharp authored on 02/08/2010 08:51:50 |
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removed plotCNSetLM function and plot method. Added linesCNSetLM function and lines method.Rob Scharp authored on 02/08/2010 08:51:48 |
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Edited plot method for CNSetLM class -- plotting prediction regions on A vs B scatterplotsRob Scharp authored on 02/08/2010 08:51:44 |
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Renamed crlmmCopynumber2 to crlmmCopynumberLD and genotype2 to genotypeLDRob Scharp authored on 02/08/2010 08:51:41 |
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Manually removed conflicts with my branch and Matt Ritchie's commit that had a bug fig for v 1.7.6Rob Scharp authored on 02/08/2010 08:51:34 |