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View d08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.
Rob Scharp authored on 21/08/2010 02:49:47
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View 33a5ea6
Added methods for flags and flags<-. Added 'flags' as an element to the LinearModelParameter object
Rob Scharp authored on 21/08/2010 02:49:41
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View c45787d
Renamed computeCN crlmmCopynumber
Rob Scharp authored on 21/08/2010 02:49:37
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View 8800496
Removed args normal and snpflags from fit.lm* functions. Removed code that initializes the flag and snpflag matrices in computeCN
Rob Scharp authored on 21/08/2010 02:49:34
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View e84db07
Commented the 2 lines in fit.lm4 indicated below
Rob Scharp authored on 21/08/2010 02:49:31
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View e63564b
begin commening the 'normal' matrix as this is not used.
Rob Scharp authored on 21/08/2010 02:49:25
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View 69ec864
Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.
Rob Scharp authored on 21/08/2010 02:49:14
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View 8160162
Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition
Rob Scharp authored on 21/08/2010 02:49:06
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View 97e84a8
Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.
Rob Scharp authored on 21/08/2010 02:48:57
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View 1a1d5f7
Fixed warning for rm(tmp,...) when tmp does not exist
Rob Scharp authored on 21/08/2010 02:48:49
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View 24da8d2
Fixed bug in call to fit.wls from fit.lm3. Added Ns argument.
Rob Scharp authored on 21/08/2010 02:48:46
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View 3c6c270
Added Ingo to the crlmm authorship. Moved Rafa to the last position.
Rob Scharp authored on 21/08/2010 02:48:43
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View b408521
removed weighted.lm option for crlmmCopynumber
Rob Scharp authored on 21/08/2010 02:48:39
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View 9c2244b
commented all of the old crlmmCopynumber code. Starting to move crlmmCopynumberLD.
Rob Scharp authored on 21/08/2010 02:48:35
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View 2551de7
changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.
Rob Scharp authored on 21/08/2010 02:48:31
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