July 27, 2010
Viewc87212d

Added method totalCopyNumber to compute the total copy number for CNSet class, regardless of whether assay data elements are ff objects.

Rob Scharp authored on 27/07/2010 03:01:30
May 27, 2010
Viewd41653d

fixed bug in copyNumber method for CNSet objects

Rob Scharp authored on 27/05/2010 14:13:18
Viewc2b6e3a

the inst/scripts/copynumber.pdf and inst/scripts/illumina_copynumber.pdf are updated. An example CNSetLM object is provided

Rob Scharp authored on 27/05/2010 13:41:50
April 11, 2010
Viewea66649

added a few Rd files. Removed metaArray from NAMESPACE

Rob Scharp authored on 11/04/2010 16:10:26
April 2, 2010
Viewd5bc779

added genotype2 and crlmmCopynumber2

Rob Scharp authored on 02/04/2010 03:03:19
March 25, 2010
Viewc00f715

updates to genotype, crlmmIlluminaRS, and crlmmCopynumber

Rob Scharp authored on 25/03/2010 13:01:51
March 18, 2010
Viewfd65333

update initializeBigMatrix. methods for CNSetLM

Rob Scharp authored on 18/03/2010 13:47:33
View1c2a3f4

fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions function

Rob Scharp authored on 18/03/2010 12:19:14
March 11, 2010
Viewe40ceb4

fixed bug in cnrma (dimnames(NP) error)

Rob Scharp authored on 11/03/2010 19:03:38
March 10, 2010
View5fcfed7

roll back to crlmm version 1.5.24

Rob Scharp authored on 10/03/2010 01:27:04
March 8, 2010
Viewa13f66d

several updates for ff. new classes for affy/illumina processing. More s4-style code

Rob Scharp authored on 08/03/2010 04:46:55
February 20, 2010
View7e1d14d

begin adding support for ff. added an option to use poe

Rob Scharp authored on 20/02/2010 23:39:45
January 12, 2010
View50f393b

updated copy number vignette. this version was used in the methods manuscript.

Rob Scharp authored on 12/01/2010 16:00:31
December 23, 2009
View7ae22f5

updated first half of inst/scripts/copynumber.Rnw, as well as a few of the help files

Rob Scharp authored on 23/12/2009 10:57:10
December 14, 2009
View82be31d

updates to namespace, cnrma-functions

Rob Scharp authored on 14/12/2009 14:12:43