March 2, 2011
Viewc75c54c

fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packages

Rob Scharp authored on 02/03/2011 00:59:03
August 30, 2010
Viewa521b1a

removed generics and methods for sigma2A and sigma2B

Rob Scharp authored on 30/08/2010 19:41:06
Viewf1e14c0

Removed tryCatch() statements in readIdatFiles. Restored previous implementation.

Rob Scharp authored on 30/08/2010 19:40:19
August 21, 2010
View6b75ec7

Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.R

Rob Scharp authored on 21/08/2010 02:50:15
View6846d58

Numerous changed to copy number estimation detailed below.

Rob Scharp authored on 21/08/2010 02:49:54
Viewd08acba

A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
View69ec864

Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.

Rob Scharp authored on 21/08/2010 02:49:14
View8160162

Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition

Rob Scharp authored on 21/08/2010 02:49:06
View97e84a8

Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.

Rob Scharp authored on 21/08/2010 02:48:57
View2c958cf

Changed generic for CA and CB to include index i for markers and index j for samples

Rob Scharp authored on 21/08/2010 02:48:17
View481f470

added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:14
View518a290

Added accessors for linear model parameters.

Rob Scharp authored on 21/08/2010 02:47:15
August 2, 2010
Viewb9ad9e2

removed plotCNSetLM function and plot method. Added linesCNSetLM function and lines method.

Rob Scharp authored on 02/08/2010 08:51:48
Viewadde216

Manually removed conflicts with my branch and Matt Ritchie's commit that had a bug fig for v 1.7.6

Rob Scharp authored on 02/08/2010 08:51:34
April 2, 2010
Viewd5bc779

added genotype2 and crlmmCopynumber2

Rob Scharp authored on 02/04/2010 03:03:19