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View 96d10c6
cleaned up a few of the classes. defined new class called CNSet to take the place of CrlmmSetRob Scharp authored on 19/11/2009 14:59:04 |
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View bf8acd0
numerous changes to the code and class definitions used for copy number estimationRob Scharp authored on 15/11/2009 10:46:23 |
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View 3ddde61
updated vignettes for illumina and affyRob Scharp authored on 16/10/2009 12:08:21 |
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View e4e0b21
bug fixesRob Scharp authored on 09/10/2009 12:47:42 |
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View 2ae7850
changes to crlmmWrapper. updated vignettes in inst/scripts.Rob Scharp authored on 04/10/2009 02:37:32 |
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View 8a17c11
Fixed R CMD check warnings due to missing or suspect links in man pages. Bumped version number.Chao-Jen Wong authored on 21/09/2009 05:03:11 |
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View bd722b7
changes to vignette. removed crlmmIlluminaWrapper function. added boxplot methodRob Scharp authored on 14/08/2009 14:14:25 |
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View 43b13ec
several updates to vignette, documentation, and copy number for illumina.Rob Scharp authored on 13/08/2009 19:47:13 |
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View f9b19c6
Fixing several warnings and notesBenilton Carvalho authored on 31/07/2009 04:51:13 |
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View 4b098e3
Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.Patrick Aboyoun authored on 24/07/2009 03:16:33 |
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View c336ded
added scanDates<- for CrlmmSetList. Suggests VanillaICE>=1.7.8Rob Scharp authored on 16/07/2009 13:32:48 |
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View 9a0ac5c
computeCopynumber requires 10 or more samplesRob Scharp authored on 14/07/2009 19:45:10 |
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View b9c7172
computeCopynumber returns CrlmmSetList objectRob Scharp authored on 14/07/2009 17:22:19 |
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View 6446394
beginning of copy number methods for illumina. some work on copy number estimation for chromosome XRob Scharp authored on 06/07/2009 19:24:27 |
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View 38fb1b8
added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes.Rob Scharp authored on 25/06/2009 12:54:08 |