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genotype function is a wrapper for constructAffy, snprmaAffy, cnrmaAffy, and genotypeAffy. the *Affy functions are not currently exported.Rob Scharp authored on 30/03/2011 19:27:38 |
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add Infrastructure.pdf. remove SmoothingRawCn vignetteRob Scharp authored on 30/03/2011 02:41:16 |
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Add vignettes for copy number analysis. Add crlmmGT2.R fileRob Scharp authored on 30/03/2011 02:41:00 |
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make gender an ff object in genotype function for AffyRob Scharp authored on 30/03/2011 02:40:42 |
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crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2.Rob Scharp authored on 30/03/2011 02:40:33 |
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edits to posteriorMean.snpRob Scharp authored on 30/03/2011 02:40:28 |
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bumped versionRob Scharp authored on 30/03/2011 02:40:22 |
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write to calls and callProbability slots in processIDAT. Remove corresponding writes from genotypeInf.Rob Scharp authored on 30/03/2011 02:40:18 |
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open and close cnSet$gender in genotypeInfRob Scharp authored on 30/03/2011 02:40:13 |
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Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.Rob Scharp authored on 30/03/2011 02:40:07 |
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remove callSet from genotype.Illumina argsRob Scharp authored on 18/03/2011 01:57:35 |
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Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.Rob Scharp authored on 18/03/2011 01:57:30 |
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genotype.Illumina only supports ff. no matrix optionRob Scharp authored on 18/03/2011 01:57:25 |
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Remove argument 'sel' from processIDAT and replace with 'stratum' and 'sampleBatches'Rob Scharp authored on 18/03/2011 01:57:20 |
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bug fix in for loopRob Scharp authored on 18/03/2011 01:57:16 |