March 30, 2011
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genotype function is a wrapper for constructAffy, snprmaAffy, cnrmaAffy, and genotypeAffy. the *Affy functions are not currently exported.

Rob Scharp authored on 30/03/2011 19:27:38
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add Infrastructure.pdf. remove SmoothingRawCn vignette

Rob Scharp authored on 30/03/2011 02:41:16
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Add vignettes for copy number analysis. Add crlmmGT2.R file

Rob Scharp authored on 30/03/2011 02:41:00
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make gender an ff object in genotype function for Affy

Rob Scharp authored on 30/03/2011 02:40:42
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crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2.

Rob Scharp authored on 30/03/2011 02:40:33
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edits to posteriorMean.snp

Rob Scharp authored on 30/03/2011 02:40:28
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bumped version

Rob Scharp authored on 30/03/2011 02:40:22
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write to calls and callProbability slots in processIDAT. Remove corresponding writes from genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:18
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open and close cnSet$gender in genotypeInf

Rob Scharp authored on 30/03/2011 02:40:13
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Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:07
March 18, 2011
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remove callSet from genotype.Illumina args

Rob Scharp authored on 18/03/2011 01:57:35
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Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.

Rob Scharp authored on 18/03/2011 01:57:30
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genotype.Illumina only supports ff. no matrix option

Rob Scharp authored on 18/03/2011 01:57:25
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Remove argument 'sel' from processIDAT and replace with 'stratum' and 'sampleBatches'

Rob Scharp authored on 18/03/2011 01:57:20
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bug fix in for loop

Rob Scharp authored on 18/03/2011 01:57:16