 |
View b59e832
genotype function is a wrapper for constructAffy, snprmaAffy, cnrmaAffy, and genotypeAffy. the *Affy functions are not currently exported.Rob Scharp authored on 30/03/2011 19:27:38 |
|
View 0d9d10e
add Infrastructure.pdf. remove SmoothingRawCn vignetteRob Scharp authored on 30/03/2011 02:41:16 |
|
View 16fadf1
Add vignettes for copy number analysis. Add crlmmGT2.R fileRob Scharp authored on 30/03/2011 02:41:00 |
|
View 284565d
make gender an ff object in genotype function for AffyRob Scharp authored on 30/03/2011 02:40:42 |
|
View 5b19b0f
crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2.Rob Scharp authored on 30/03/2011 02:40:33 |
|
View 970a0fd
edits to posteriorMean.snpRob Scharp authored on 30/03/2011 02:40:28 |
|
View e29775f
bumped versionRob Scharp authored on 30/03/2011 02:40:22 |
|
View 5c9f60e
write to calls and callProbability slots in processIDAT. Remove corresponding writes from genotypeInf.Rob Scharp authored on 30/03/2011 02:40:18 |
|
View 252da92
open and close cnSet$gender in genotypeInfRob Scharp authored on 30/03/2011 02:40:13 |
|
View f0f8ba1
Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.Rob Scharp authored on 30/03/2011 02:40:07 |
|
View ac7e0c8
remove callSet from genotype.Illumina argsRob Scharp authored on 18/03/2011 01:57:35 |
|
View cfa9fbb
Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.Rob Scharp authored on 18/03/2011 01:57:30 |
|
View d878c18
genotype.Illumina only supports ff. no matrix optionRob Scharp authored on 18/03/2011 01:57:25 |
|
View edc69ca
Remove argument 'sel' from processIDAT and replace with 'stratum' and 'sampleBatches'Rob Scharp authored on 18/03/2011 01:57:20 |
|
View 808d8cb
bug fix in for loopRob Scharp authored on 18/03/2011 01:57:16 |