November 15, 2010
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update processCEL2 -- only read intensities for NP probes that are included in the npProbesFid object

Rob Scharp authored on 15/11/2010 14:21:23
November 11, 2010
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Bumped version.

Rob Scharp authored on 11/11/2010 04:13:40
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genotype function should be independent of annotation package version

Rob Scharp authored on 11/11/2010 04:13:23
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Bug fix for estimation of copy number at nonpolymorphic loci on chromosome X.

Rob Scharp authored on 11/11/2010 04:13:08
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getFeatureData only returns features with chromosome annotation

Rob Scharp authored on 11/11/2010 04:13:03
October 20, 2010
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import ffdf class from oligoClasses

Rob Scharp authored on 20/10/2010 13:43:26
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Update summarizeNps function for illumina platform

Rob Scharp authored on 20/10/2010 13:43:06
October 4, 2010
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Remove help file for ffdf-class. Adding documentation for CNSet accessors.

Rob Scharp authored on 04/10/2010 02:21:59
August 30, 2010
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importing ff_matrix class from oligoClasses

Rob Scharp authored on 30/08/2010 19:41:12
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more pruning of NAMESPACE

Rob Scharp authored on 30/08/2010 19:41:10
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cleaned some of the temporary exports in the namespace

Rob Scharp authored on 30/08/2010 19:41:08
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Revised accesors in methods-AssayData -- some of the conflicts resolved by hand during rebase were incorrect

Rob Scharp authored on 30/08/2010 19:41:03
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CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN function

Rob Scharp authored on 30/08/2010 19:40:54
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Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette

Rob Scharp authored on 30/08/2010 19:40:42
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constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ...

Rob Scharp authored on 30/08/2010 19:40:33