November 15, 2010
View a268cdc

Bug in copy number accessors fixed.

Rob Scharp authored on 15/11/2010 14:21:58
View 197c791

Fix bug in CB accessor for nonpolymorphic markers

Rob Scharp authored on 15/11/2010 14:21:52
View f373895

update ACN function

Rob Scharp authored on 15/11/2010 14:20:57
November 11, 2010
View 89c5fe9

Updates to genotype function and copy number accessors.

Rob Scharp authored on 11/11/2010 04:13:34
View f3d4014

genotype function should be independent of annotation package version

Rob Scharp authored on 11/11/2010 04:13:23
View 4191b5f

Bug fix for estimation of copy number at nonpolymorphic loci on chromosome X.

Rob Scharp authored on 11/11/2010 04:13:08
August 30, 2010
View 9568a40

Fixed bug in totalCopynumber for datasets with more than 2000 samples.

Rob Scharp authored on 30/08/2010 19:41:24
View a521b1a

removed generics and methods for sigma2A and sigma2B

Rob Scharp authored on 30/08/2010 19:41:06
View d5b39e2

CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN function

Rob Scharp authored on 30/08/2010 19:40:54
View 8e2d935

my .emacs wants to remove white spaces at end of lines. no substantive changes here

Rob Scharp authored on 30/08/2010 19:40:50
View 0198a9a

Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette

Rob Scharp authored on 30/08/2010 19:40:42
View 10b0407

moved totalCopyNumber method to oligoClasses package.

Rob Scharp authored on 30/08/2010 19:40:26
View 630adba

Exporting list and ffdf classes so that lM<- assignment works

Rob Scharp authored on 30/08/2010 19:40:16
August 21, 2010
View 1715856

A few edits to copynumber vignette and sample.CNSetLM Rd file

Rob Scharp authored on 21/08/2010 02:50:25
View fda1107

methods Ns, medians, corr, and mads return arrays.

Rob Scharp authored on 21/08/2010 02:50:19