August 21, 2010
View97e84a8

Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.

Rob Scharp authored on 21/08/2010 02:48:57
View1a1d5f7

Fixed warning for rm(tmp,...) when tmp does not exist

Rob Scharp authored on 21/08/2010 02:48:49
View24da8d2

Fixed bug in call to fit.wls from fit.lm3. Added Ns argument.

Rob Scharp authored on 21/08/2010 02:48:46
View3c6c270

Added Ingo to the crlmm authorship. Moved Rafa to the last position.

Rob Scharp authored on 21/08/2010 02:48:43
Viewb408521

removed weighted.lm option for crlmmCopynumber

Rob Scharp authored on 21/08/2010 02:48:39
View9c2244b

commented all of the old crlmmCopynumber code. Starting to move crlmmCopynumberLD.

Rob Scharp authored on 21/08/2010 02:48:35
View2551de7

changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.

Rob Scharp authored on 21/08/2010 02:48:31
View805ca33

added ACN method in methods-CNSet.R. CA and CB call ACN.

Rob Scharp authored on 21/08/2010 02:48:26
Viewddc94a5

commented gc() calls

Rob Scharp authored on 21/08/2010 02:48:21
View2c958cf

Changed generic for CA and CB to include index i for markers and index j for samples

Rob Scharp authored on 21/08/2010 02:48:17
View481f470

added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:14
View752632c

added totalCopyNumber method to methods-CNSet (removed from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:11
View63fb6e4

Added CA, CB methods to methods-CNSet.R

Rob Scharp authored on 21/08/2010 02:48:08
View88f551c

commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions

Rob Scharp authored on 21/08/2010 02:48:04
Viewc5305d8

changed 'batches' to 'sample.strata' in genotype function to avoid confusion

Rob Scharp authored on 21/08/2010 02:48:00