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View 9568a40
Fixed bug in totalCopynumber for datasets with more than 2000 samples.Rob Scharp authored on 30/08/2010 19:41:24 |
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View a521b1a
removed generics and methods for sigma2A and sigma2BRob Scharp authored on 30/08/2010 19:41:06 |
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View d5b39e2
CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN functionRob Scharp authored on 30/08/2010 19:40:54 |
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View 8e2d935
my .emacs wants to remove white spaces at end of lines. no substantive changes hereRob Scharp authored on 30/08/2010 19:40:50 |
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View 0198a9a
Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignetteRob Scharp authored on 30/08/2010 19:40:42 |
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View 10b0407
moved totalCopyNumber method to oligoClasses package.Rob Scharp authored on 30/08/2010 19:40:26 |
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View 630adba
Exporting list and ffdf classes so that lM<- assignment worksRob Scharp authored on 30/08/2010 19:40:16 |
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View 1715856
A few edits to copynumber vignette and sample.CNSetLM Rd fileRob Scharp authored on 21/08/2010 02:50:25 |
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View fda1107
methods Ns, medians, corr, and mads return arrays.Rob Scharp authored on 21/08/2010 02:50:19 |
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View 6b75ec7
Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.RRob Scharp authored on 21/08/2010 02:50:15 |
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View df2226f
Changed totalCopyNumber to totalCopynumber to be consistent with caps in crlmmCopynumber. Fixed a few bugs in the .Rd filesRob Scharp authored on 21/08/2010 02:50:10 |
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View 66900fe
Edits to CA,CB, ACN accessors for copy numberRob Scharp authored on 21/08/2010 02:50:05 |
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View ada0da1
commented replacement method for snpCallProbability.Rob Scharp authored on 21/08/2010 02:50:00 |
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View 6846d58
Numerous changed to copy number estimation detailed below.Rob Scharp authored on 21/08/2010 02:49:54 |
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View d08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.Rob Scharp authored on 21/08/2010 02:49:47 |