July 2, 2009
View852cc5c

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@40465 bc3139a8-67e5-0310-9ffc-ced21a209358

unknown authored on 02/07/2009 07:39:23
June 29, 2009
View45dab54

update computeCopynumber, added .R files for new classes/methods

Rob Scharp authored on 29/06/2009 12:29:11
June 25, 2009
View38fb1b8

added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes.

Rob Scharp authored on 25/06/2009 12:54:08
April 4, 2009
Viewa83b4ac

fixed location/scale for chromosome X in oneBatch function

Rob Scharp authored on 04/04/2009 20:10:07
April 2, 2009
View3834dba

Exposing snprma()

Benilton Carvalho authored on 02/04/2009 20:12:10
April 1, 2009
View58b6a5d

added normalize.quantiles to importFrom() field in NAMESPACE and updated man pages

unknown authored on 01/04/2009 06:24:30
March 30, 2009
Viewcd8b85b

added code to handle illumina snp array data

unknown authored on 30/03/2009 02:25:09
March 28, 2009
View95d22b5

crlmm returns a SnpSet object

Benilton Carvalho authored on 28/03/2009 04:43:33
March 25, 2009
Viewf8af2ff

changes to computeCopynumber function. Exporting wrapper for extracting dates from the cel file header

Rob Scharp authored on 25/03/2009 13:12:49
March 7, 2009
Viewc255087

require high confidence score of genotypes for computing sufficient statistics

Rob Scharp authored on 07/03/2009 19:03:38
Viewd8510bb

require that the confidence scores exceed a threshold for computing within genotype means. SNPs not meeting this threshold are flagged and a warning message is produced

Rob Scharp authored on 07/03/2009 11:31:53
March 4, 2009
View7f4ca01

added a bias correction for common copy number variants

Rob Scharp authored on 04/03/2009 19:24:13
March 3, 2009
Viewaa24f92

copynumber vignette in inst/scripts uses hapmap data. added man page for computeCopynumber, updated NAMESPACE

Rob Scharp authored on 03/03/2009 11:24:38
Viewe3fb27d

a few changes to inst/testing/copynumber. exporting cnrma

Rob Scharp authored on 03/03/2009 09:17:02
March 2, 2009
Viewf32a09d

Added solution for vignettes that depend on external data. Fixed documentation. Added CHANGES and TODO files.

Benilton Carvalho authored on 02/03/2009 22:34:22