Bioconductor Code: Browse

July 2, 2009

	View852cc5c git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@40465 bc3139a8-67e5-0310-9ffc-ced21a209358 unknown authored on 02/07/2009 07:39:23

June 29, 2009

	View45dab54 update computeCopynumber, added .R files for new classes/methods Rob Scharp authored on 29/06/2009 12:29:11

June 25, 2009

	View38fb1b8 added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes. Rob Scharp authored on 25/06/2009 12:54:08

April 4, 2009

	Viewa83b4ac fixed location/scale for chromosome X in oneBatch function Rob Scharp authored on 04/04/2009 20:10:07

April 2, 2009

	View3834dba Exposing snprma() Benilton Carvalho authored on 02/04/2009 20:12:10

April 1, 2009

	View58b6a5d added normalize.quantiles to importFrom() field in NAMESPACE and updated man pages unknown authored on 01/04/2009 06:24:30

March 30, 2009

	Viewcd8b85b added code to handle illumina snp array data unknown authored on 30/03/2009 02:25:09

March 28, 2009

	View95d22b5 crlmm returns a SnpSet object Benilton Carvalho authored on 28/03/2009 04:43:33

March 25, 2009

	Viewf8af2ff changes to computeCopynumber function. Exporting wrapper for extracting dates from the cel file header Rob Scharp authored on 25/03/2009 13:12:49

March 7, 2009

	Viewc255087 require high confidence score of genotypes for computing sufficient statistics Rob Scharp authored on 07/03/2009 19:03:38
	Viewd8510bb require that the confidence scores exceed a threshold for computing within genotype means. SNPs not meeting this threshold are flagged and a warning message is produced Rob Scharp authored on 07/03/2009 11:31:53

March 4, 2009

	View7f4ca01 added a bias correction for common copy number variants Rob Scharp authored on 04/03/2009 19:24:13

March 3, 2009

	Viewaa24f92 copynumber vignette in inst/scripts uses hapmap data. added man page for computeCopynumber, updated NAMESPACE Rob Scharp authored on 03/03/2009 11:24:38
	Viewe3fb27d a few changes to inst/testing/copynumber. exporting cnrma Rob Scharp authored on 03/03/2009 09:17:02

March 2, 2009

	Viewf32a09d Added solution for vignettes that depend on external data. Fixed documentation. Added CHANGES and TODO files. Benilton Carvalho authored on 02/03/2009 22:34:22