August 30, 2010
View7f14b4e

Removed helperFunctions.R. Added totalCopyNumber method to methods-CNSet.

Rob Scharp authored on 30/08/2010 15:45:33
July 27, 2010
View7434538

Updated copy number vignettes and copy number citation.

Rob Scharp authored on 27/07/2010 03:02:03
View6ec3ec4

Removed export of totalCopyNumber from namespace and totalCopyNumber method from methods-CNSet

Rob Scharp authored on 27/07/2010 03:01:41
View86556c4

use explicit coercion of CA and CB to matrices in copyNumber method

Rob Scharp authored on 27/07/2010 03:01:37
View4c48a3d

Need to export ffdf and list class so that lM<- assignment works. Added totalCopyNumber method.

Rob Scharp authored on 27/07/2010 03:01:34
Viewc87212d

Added method totalCopyNumber to compute the total copy number for CNSet class, regardless of whether assay data elements are ff objects.

Rob Scharp authored on 27/07/2010 03:01:30
May 27, 2010
Viewd41653d

fixed bug in copyNumber method for CNSet objects

Rob Scharp authored on 27/05/2010 14:13:18
Viewc2b6e3a

the inst/scripts/copynumber.pdf and inst/scripts/illumina_copynumber.pdf are updated. An example CNSetLM object is provided

Rob Scharp authored on 27/05/2010 13:41:50
April 11, 2010
Viewea66649

added a few Rd files. Removed metaArray from NAMESPACE

Rob Scharp authored on 11/04/2010 16:10:26
April 2, 2010
Viewd5bc779

added genotype2 and crlmmCopynumber2

Rob Scharp authored on 02/04/2010 03:03:19
March 25, 2010
Viewc00f715

updates to genotype, crlmmIlluminaRS, and crlmmCopynumber

Rob Scharp authored on 25/03/2010 13:01:51
March 18, 2010
Viewfd65333

update initializeBigMatrix. methods for CNSetLM

Rob Scharp authored on 18/03/2010 13:47:33
View1c2a3f4

fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions function

Rob Scharp authored on 18/03/2010 12:19:14
March 11, 2010
Viewe40ceb4

fixed bug in cnrma (dimnames(NP) error)

Rob Scharp authored on 11/03/2010 19:03:38
March 10, 2010
View5fcfed7

roll back to crlmm version 1.5.24

Rob Scharp authored on 10/03/2010 01:27:04