August 30, 2010
View7f14b4e

Removed helperFunctions.R. Added totalCopyNumber method to methods-CNSet.

Rob Scharp authored on 30/08/2010 15:45:33
July 27, 2010
Viewc87212d

Added method totalCopyNumber to compute the total copy number for CNSet class, regardless of whether assay data elements are ff objects.

Rob Scharp authored on 27/07/2010 03:01:30
April 2, 2010
Viewd5bc779

added genotype2 and crlmmCopynumber2

Rob Scharp authored on 02/04/2010 03:03:19
March 25, 2010
Viewc00f715

updates to genotype, crlmmIlluminaRS, and crlmmCopynumber

Rob Scharp authored on 25/03/2010 13:01:51
March 18, 2010
View1c2a3f4

fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions function

Rob Scharp authored on 18/03/2010 12:19:14
March 10, 2010
Viewa333524

updated description, added AllClasses.R

Rob Scharp authored on 10/03/2010 14:53:53
View5fcfed7

roll back to crlmm version 1.5.24

Rob Scharp authored on 10/03/2010 01:27:04
March 8, 2010
Viewa13f66d

several updates for ff. new classes for affy/illumina processing. More s4-style code

Rob Scharp authored on 08/03/2010 04:46:55
February 20, 2010
View7e1d14d

begin adding support for ff. added an option to use poe

Rob Scharp authored on 20/02/2010 23:39:45
December 23, 2009
View73436da

removed generics for addFeatureAnnotation and GT<-

Rob Scharp authored on 23/12/2009 12:55:31
View7ae22f5

updated first half of inst/scripts/copynumber.Rnw, as well as a few of the help files

Rob Scharp authored on 23/12/2009 10:57:10
December 14, 2009
View82be31d

updates to namespace, cnrma-functions

Rob Scharp authored on 14/12/2009 14:12:43
December 3, 2009
Viewbc16b51

updates for compatability with oligoClasses

Rob Scharp authored on 03/12/2009 13:02:58
November 15, 2009
Viewbf8acd0

numerous changes to the code and class definitions used for copy number estimation

Rob Scharp authored on 15/11/2009 10:46:23
October 4, 2009
View2ae7850

changes to crlmmWrapper. updated vignettes in inst/scripts.

Rob Scharp authored on 04/10/2009 02:37:32