Bioconductor Code: crlmm

August 30, 2010

	View 7f14b4e Removed helperFunctions.R. Added totalCopyNumber method to methods-CNSet. Rob Scharp authored on 30/08/2010 15:45:33

July 27, 2010

	View c87212d Added method totalCopyNumber to compute the total copy number for CNSet class, regardless of whether assay data elements are ff objects. Rob Scharp authored on 27/07/2010 03:01:30

April 2, 2010

	View d5bc779 added genotype2 and crlmmCopynumber2 Rob Scharp authored on 02/04/2010 03:03:19

March 25, 2010

	View c00f715 updates to genotype, crlmmIlluminaRS, and crlmmCopynumber Rob Scharp authored on 25/03/2010 13:01:51

March 18, 2010

	View 1c2a3f4 fixed bugs in genotype and crlmmIlluminaRS. changed arguments to crlmmCopynumber. removed cnOptions function Rob Scharp authored on 18/03/2010 12:19:14

March 10, 2010

	View a333524 updated description, added AllClasses.R Rob Scharp authored on 10/03/2010 14:53:53
	View 5fcfed7 roll back to crlmm version 1.5.24 Rob Scharp authored on 10/03/2010 01:27:04

March 8, 2010

	View a13f66d several updates for ff. new classes for affy/illumina processing. More s4-style code Rob Scharp authored on 08/03/2010 04:46:55

February 20, 2010

	View 7e1d14d begin adding support for ff. added an option to use poe Rob Scharp authored on 20/02/2010 23:39:45

December 23, 2009

	View 73436da removed generics for addFeatureAnnotation and GT<- Rob Scharp authored on 23/12/2009 12:55:31
	View 7ae22f5 updated first half of inst/scripts/copynumber.Rnw, as well as a few of the help files Rob Scharp authored on 23/12/2009 10:57:10

December 14, 2009

	View 82be31d updates to namespace, cnrma-functions Rob Scharp authored on 14/12/2009 14:12:43

December 3, 2009

	View bc16b51 updates for compatability with oligoClasses Rob Scharp authored on 03/12/2009 13:02:58

November 15, 2009

	View bf8acd0 numerous changes to the code and class definitions used for copy number estimation Rob Scharp authored on 15/11/2009 10:46:23

October 4, 2009

	View 2ae7850 changes to crlmmWrapper. updated vignettes in inst/scripts. Rob Scharp authored on 04/10/2009 02:37:32