August 30, 2010
View7f14b4e

Removed helperFunctions.R. Added totalCopyNumber method to methods-CNSet.

Rob Scharp authored on 30/08/2010 15:45:33
View39be476

moved constructAssayData and constructFeatureData to cnrma-functions.R

Rob Scharp authored on 30/08/2010 15:45:27
View348dfe4

Added a checks to see whether XY@assayData$X is 'ff' or 'ffdf' in preprocessInfinium2

Rob Scharp authored on 30/08/2010 15:45:24
Viewd656403

changes in preprocessInfinium2 to accomodate "humanomniexpress12v1b" platform

Rob Scharp authored on 30/08/2010 15:45:18
View5681683

Changes to support humanomniexpress12v1b illumina platform

Rob Scharp authored on 30/08/2010 15:45:15
July 27, 2010
View7434538

Updated copy number vignettes and copy number citation.

Rob Scharp authored on 27/07/2010 03:02:03
View6ec3ec4

Removed export of totalCopyNumber from namespace and totalCopyNumber method from methods-CNSet

Rob Scharp authored on 27/07/2010 03:01:41
View86556c4

use explicit coercion of CA and CB to matrices in copyNumber method

Rob Scharp authored on 27/07/2010 03:01:37
View4c48a3d

Need to export ffdf and list class so that lM<- assignment works. Added totalCopyNumber method.

Rob Scharp authored on 27/07/2010 03:01:34
Viewc87212d

Added method totalCopyNumber to compute the total copy number for CNSet class, regardless of whether assay data elements are ff objects.

Rob Scharp authored on 27/07/2010 03:01:30
Viewdbee827

Exposed a few helper functions in the illumina_copynumber vignette. Modified the function construct.

Rob Scharp authored on 27/07/2010 03:01:11
May 27, 2010
Viewd41653d

fixed bug in copyNumber method for CNSet objects

Rob Scharp authored on 27/05/2010 14:13:18
Viewc2b6e3a

the inst/scripts/copynumber.pdf and inst/scripts/illumina_copynumber.pdf are updated. An example CNSetLM object is provided

Rob Scharp authored on 27/05/2010 13:41:50
April 16, 2010
View551018e

Started debugging - memory spike

Benilton Carvalho authored on 16/04/2010 16:02:49
April 11, 2010
Viewea66649

added a few Rd files. Removed metaArray from NAMESPACE

Rob Scharp authored on 11/04/2010 16:10:26