August 30, 2010
View7f14b4e

Removed helperFunctions.R. Added totalCopyNumber method to methods-CNSet.

Rob Scharp authored on 30/08/2010 15:45:33
Viewaf672a7

No longer source helperFunctions.R. Use crlmm:::constructAssayData and crlmm:::constructFeatureData instead

Rob Scharp authored on 30/08/2010 15:45:30
View39be476

moved constructAssayData and constructFeatureData to cnrma-functions.R

Rob Scharp authored on 30/08/2010 15:45:27
View348dfe4

Added a checks to see whether XY@assayData$X is 'ff' or 'ffdf' in preprocessInfinium2

Rob Scharp authored on 30/08/2010 15:45:24
View9db0d38

illumina_copynumber vignette saves results to directory that depends on the R version

Rob Scharp authored on 30/08/2010 15:45:22
Viewd9637f7

bumped version number to 1.6.5

Rob Scharp authored on 30/08/2010 15:45:20
Viewd656403

changes in preprocessInfinium2 to accomodate "humanomniexpress12v1b" platform

Rob Scharp authored on 30/08/2010 15:45:18
View5681683

Changes to support humanomniexpress12v1b illumina platform

Rob Scharp authored on 30/08/2010 15:45:15
August 3, 2010
Viewedcff25

added crlmmDownstream.pdf to inst/scripts

Rob Scharp authored on 03/08/2010 08:04:07
August 1, 2010
Viewb333dea

restored old Makefile

Rob Scharp authored on 01/08/2010 18:41:33
July 30, 2010
View0a11968

fixed makefile

Rob Scharp authored on 30/07/2010 19:32:28
July 27, 2010
View7434538

Updated copy number vignettes and copy number citation.

Rob Scharp authored on 27/07/2010 03:02:03
Vieweca93f4

Added an empty code chunk to see if an empty R scripts web link will be generated on bioc website.

Rob Scharp authored on 27/07/2010 03:01:52
View03a252f

Added helper functions for totalCopyNumber and constructers to facilitate creating a CNSet container for the illumina platform.

Rob Scharp authored on 27/07/2010 03:01:47
View6ec3ec4

Removed export of totalCopyNumber from namespace and totalCopyNumber method from methods-CNSet

Rob Scharp authored on 27/07/2010 03:01:41