October 1, 2011
View729e92c

assigne basename(filenames) to sns if sns is missing in constructAffy function.

Rob Scharp authored on 01/10/2011 04:45:05
View18053f2

removed extraneous line in rowMAD

Rob Scharp authored on 01/10/2011 04:44:43
April 30, 2011
View531a14f

check that batch length is same as length of filenames in constructAffy. Add additional documentation for CNSet class man page.

Rob Scharp authored on 30/04/2011 01:49:59
April 8, 2011
View415a3b0

fit.lm4 returns a CNSet object if assayData elements are matrices

Rob Scharp authored on 08/04/2011 19:05:07
April 3, 2011
View7cc879b

bug fix in 'computeSummary' function

Rob Scharp authored on 03/04/2011 02:50:01
View7978fa6

comment grand mean summaries in summarizeSnps

Rob Scharp authored on 03/04/2011 02:49:55
March 31, 2011
View669c6a9

Update copy number vignettes. Pass cdfName to cnrmaAffy function.

Rob Scharp authored on 31/03/2011 16:52:11
March 30, 2011
Viewb59e832

genotype function is a wrapper for constructAffy, snprmaAffy, cnrmaAffy, and genotypeAffy. the *Affy functions are not currently exported.

Rob Scharp authored on 30/03/2011 19:27:38
View16fadf1

Add vignettes for copy number analysis. Add crlmmGT2.R file

Rob Scharp authored on 30/03/2011 02:41:00
View284565d

make gender an ff object in genotype function for Affy

Rob Scharp authored on 30/03/2011 02:40:42
View5b19b0f

crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2.

Rob Scharp authored on 30/03/2011 02:40:33
View970a0fd

edits to posteriorMean.snp

Rob Scharp authored on 30/03/2011 02:40:28
Viewf0f8ba1

Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:07
March 18, 2011
Viewcfa9fbb

Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.

Rob Scharp authored on 18/03/2011 01:57:30
Viewdd44a16

add scale.sd option to computePosteriorMeans

Rob Scharp authored on 18/03/2011 01:57:07