August 21, 2010
View6b75ec7

Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.R

Rob Scharp authored on 21/08/2010 02:50:15
Viewdf2226f

Changed totalCopyNumber to totalCopynumber to be consistent with caps in crlmmCopynumber. Fixed a few bugs in the .Rd files

Rob Scharp authored on 21/08/2010 02:50:10
View66900fe

Edits to CA,CB, ACN accessors for copy number

Rob Scharp authored on 21/08/2010 02:50:05
View6846d58

Numerous changed to copy number estimation detailed below.

Rob Scharp authored on 21/08/2010 02:49:54
Viewd08acba

A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
View33a5ea6

Added methods for flags and flags<-. Added 'flags' as an element to the LinearModelParameter object

Rob Scharp authored on 21/08/2010 02:49:41
View69ec864

Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.

Rob Scharp authored on 21/08/2010 02:49:14
View8160162

Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition

Rob Scharp authored on 21/08/2010 02:49:06
View97e84a8

Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.

Rob Scharp authored on 21/08/2010 02:48:57
View3c6c270

Added Ingo to the crlmm authorship. Moved Rafa to the last position.

Rob Scharp authored on 21/08/2010 02:48:43
View805ca33

added ACN method in methods-CNSet.R. CA and CB call ACN.

Rob Scharp authored on 21/08/2010 02:48:26
View481f470

added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:14
View752632c

added totalCopyNumber method to methods-CNSet (removed from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:11
View63fb6e4

Added CA, CB methods to methods-CNSet.R

Rob Scharp authored on 21/08/2010 02:48:08
View5a23c45

Commented out computation of standard errors for coefficients. Replaced crossprod(solve...) with call to the Fortran library dqrls

Rob Scharp authored on 21/08/2010 02:47:35