July 8, 2012
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Merge branch 'collab'

Rob Scharp authored on 08/07/2012 19:00:03
October 1, 2011
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Simplify accessors for batch summaries: Ns, corr, medians, mads

Rob Scharp authored on 01/10/2011 04:48:38
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Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean.

Rob Scharp authored on 01/10/2011 04:46:51
October 4, 2010
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Add illumina_copynumber.pdf to package.

Rob Scharp authored on 04/10/2010 02:21:53
August 30, 2010
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Revised accesors in methods-AssayData -- some of the conflicts resolved by hand during rebase were incorrect

Rob Scharp authored on 30/08/2010 19:41:03
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added open and close statements in Ns and corr accessors

Rob Scharp authored on 30/08/2010 19:40:57
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CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN function

Rob Scharp authored on 30/08/2010 19:40:54
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Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette

Rob Scharp authored on 30/08/2010 19:40:42
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constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ...

Rob Scharp authored on 30/08/2010 19:40:33
August 21, 2010
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methods Ns, medians, corr, and mads return arrays.

Rob Scharp authored on 21/08/2010 02:50:19
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Numerous changed to copy number estimation detailed below.

Rob Scharp authored on 21/08/2010 02:49:54