October 3, 2011
Viewb6f0c38

bringing changes from GitHub; from now on, keeping code on BioC servers

Benilton Carvalho authored on 03/10/2011 18:12:55
October 1, 2011
View4c4e930

Add calculateRBaf method

Rob Scharp authored on 01/10/2011 04:50:37
View7818b53

Remove snpNames method and generic

Rob Scharp authored on 01/10/2011 04:50:30
View301fb7d

Removed 'signed=FALSE' argument from readBin() calls in readIDAT() and readBMP() is cases where the 'size' argument is greater than 2 [apparently this produces a warning in the devel version or R - problem reported by Kasper Daniel Hansen]

Rob Scharp authored on 01/10/2011 04:50:24
View893d23a

update imputeGender (add args for SNR and SNRMin)

Rob Scharp authored on 01/10/2011 04:50:19
View4c0f34d

Edit genotypeAffy wrapper for crlmmGT2 (snp.names no longer an argument to crlmmGT2)

Rob Scharp authored on 01/10/2011 04:50:12
Viewd0d8339

Make API for crlmmGT2 the same as crlmmGT. Define snpNames method for 'character'.

Rob Scharp authored on 01/10/2011 04:50:07
Viewbd99a58

Remove predictGender. Add imputeGender. crlmmGT and crlmmGT2 call imputeGender

Rob Scharp authored on 01/10/2011 04:49:56
Viewe95fbc1

Use ratio of SNP intensities on chromosomes X and Y to impute gender. Modifications in crlmmGT2 and crlmmGT.

Rob Scharp authored on 01/10/2011 04:49:50
View6fbd248

Add methods-PredictionRegion.R. Contains '[' method for PredictionRegion class

Rob Scharp authored on 01/10/2011 04:49:44
View16b9de7

Edits to xyplot example

Rob Scharp authored on 01/10/2011 04:49:37
View97a2ac4

Use original version of bivariateCenter.

Rob Scharp authored on 01/10/2011 04:49:31
Viewdd7ad7b

Add Lynn's calculateBAFandLRR function -- not exported

Rob Scharp authored on 01/10/2011 04:49:26
Viewcd6d42f

Add PredictionRegion class that contains 'list'. Export in NAMESPACE. predictionRegion returns PredictionRegion class.

Rob Scharp authored on 01/10/2011 04:49:20
Viewb398d6f

Update posteriorProbability for handling nonpolymorphic markers

Rob Scharp authored on 01/10/2011 04:49:02