August 30, 2010
View5681683

Changes to support humanomniexpress12v1b illumina platform

Rob Scharp authored on 30/08/2010 15:45:15
July 27, 2010
View7434538

Updated copy number vignettes and copy number citation.

Rob Scharp authored on 27/07/2010 03:02:03
May 27, 2010
Viewc2b6e3a

the inst/scripts/copynumber.pdf and inst/scripts/illumina_copynumber.pdf are updated. An example CNSetLM object is provided

Rob Scharp authored on 27/05/2010 13:41:50
January 12, 2010
View50f393b

updated copy number vignette. this version was used in the methods manuscript.

Rob Scharp authored on 12/01/2010 16:00:31
December 23, 2009
View7ae22f5

updated first half of inst/scripts/copynumber.Rnw, as well as a few of the help files

Rob Scharp authored on 23/12/2009 10:57:10
October 16, 2009
View3ddde61

updated vignettes for illumina and affy

Rob Scharp authored on 16/10/2009 12:08:21
October 4, 2009
View2ae7850

changes to crlmmWrapper. updated vignettes in inst/scripts.

Rob Scharp authored on 04/10/2009 02:37:32
August 14, 2009
Viewbd722b7

changes to vignette. removed crlmmIlluminaWrapper function. added boxplot method

Rob Scharp authored on 14/08/2009 14:14:25
August 13, 2009
View43b13ec

several updates to vignette, documentation, and copy number for illumina.

Rob Scharp authored on 13/08/2009 19:47:13
August 4, 2009
Viewfe3e3f6

updated readIdatFiles

Rob Scharp authored on 04/08/2009 15:18:36
July 24, 2009
View4b098e3

Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

Patrick Aboyoun authored on 24/07/2009 03:16:33
July 16, 2009
Viewc336ded

added scanDates<- for CrlmmSetList. Suggests VanillaICE>=1.7.8

Rob Scharp authored on 16/07/2009 13:32:48
July 14, 2009
Viewb9c7172

computeCopynumber returns CrlmmSetList object

Rob Scharp authored on 14/07/2009 17:22:19
July 6, 2009
View6446394

beginning of copy number methods for illumina. some work on copy number estimation for chromosome X

Rob Scharp authored on 06/07/2009 19:24:27
June 29, 2009
View45dab54

update computeCopynumber, added .R files for new classes/methods

Rob Scharp authored on 29/06/2009 12:29:11