November 1, 2011
View5560b67

bug fix in check for NA's in calculateRTheta

Rob Scharp authored on 01/11/2011 16:32:08
View8ed2dc2

bug fig in calculateRTheta

Rob Scharp authored on 01/11/2011 16:31:57
Viewf141ce9

update calculateRTheta so that NP probes have non-missing 'R' values

Rob Scharp authored on 01/11/2011 16:31:31
October 4, 2011
View1e26a8d

Bug fix for calculateRTheta

Rob Scharp authored on 04/10/2011 16:11:40
Viewaf08b5d

crlmm on github

Rob Scharp authored on 04/10/2011 16:11:02
October 3, 2011
Viewb6f0c38

bringing changes from GitHub; from now on, keeping code on BioC servers

Benilton Carvalho authored on 03/10/2011 18:12:55
October 1, 2011
View4c4e930

Add calculateRBaf method

Rob Scharp authored on 01/10/2011 04:50:37
View7818b53

Remove snpNames method and generic

Rob Scharp authored on 01/10/2011 04:50:30
View4c0f34d

Edit genotypeAffy wrapper for crlmmGT2 (snp.names no longer an argument to crlmmGT2)

Rob Scharp authored on 01/10/2011 04:50:12
Viewd0d8339

Make API for crlmmGT2 the same as crlmmGT. Define snpNames method for 'character'.

Rob Scharp authored on 01/10/2011 04:50:07
Viewe95fbc1

Use ratio of SNP intensities on chromosomes X and Y to impute gender. Modifications in crlmmGT2 and crlmmGT.

Rob Scharp authored on 01/10/2011 04:49:50
Viewdd7ad7b

Add Lynn's calculateBAFandLRR function -- not exported

Rob Scharp authored on 01/10/2011 04:49:26
View8be0a10

Update Rd files. xyplot method checks for existance of 'predictionRange'. If not found, we use callNextMethod() [Should help avoid conflicts with VanillaICE method for xyplot]

Rob Scharp authored on 01/10/2011 04:48:57
View004788f

Add ABpanel help file and add fill argument

Rob Scharp authored on 01/10/2011 04:47:42
View96fb65c

Update generics for posteriorProbability and calculatePosteriorMean (exclude weight from generic of calculatePosteriorMean)

Rob Scharp authored on 01/10/2011 04:47:35