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View e516fad
Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean.Rob Scharp authored on 01/10/2011 04:46:51 |
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View c75c54c
fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packagesRob Scharp authored on 02/03/2011 00:59:03 |
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View a521b1a
removed generics and methods for sigma2A and sigma2BRob Scharp authored on 30/08/2010 19:41:06 |
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View f1e14c0
Removed tryCatch() statements in readIdatFiles. Restored previous implementation.Rob Scharp authored on 30/08/2010 19:40:19 |
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View 6b75ec7
Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.RRob Scharp authored on 21/08/2010 02:50:15 |
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View 6846d58
Numerous changed to copy number estimation detailed below.Rob Scharp authored on 21/08/2010 02:49:54 |
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View d08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.Rob Scharp authored on 21/08/2010 02:49:47 |
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View 69ec864
Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.Rob Scharp authored on 21/08/2010 02:49:14 |
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View 8160162
Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definitionRob Scharp authored on 21/08/2010 02:49:06 |
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View 97e84a8
Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.Rob Scharp authored on 21/08/2010 02:48:57 |
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View 2c958cf
Changed generic for CA and CB to include index i for markers and index j for samplesRob Scharp authored on 21/08/2010 02:48:17 |
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View 481f470
added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)Rob Scharp authored on 21/08/2010 02:48:14 |
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View 518a290
Added accessors for linear model parameters.Rob Scharp authored on 21/08/2010 02:47:15 |
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View b9ad9e2
removed plotCNSetLM function and plot method. Added linesCNSetLM function and lines method.Rob Scharp authored on 02/08/2010 08:51:48 |
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View adde216
Manually removed conflicts with my branch and Matt Ritchie's commit that had a bug fig for v 1.7.6Rob Scharp authored on 02/08/2010 08:51:34 |