October 1, 2011
View4c4e930

Add calculateRBaf method

Rob Scharp authored on 01/10/2011 04:50:37
View97a2ac4

Use original version of bivariateCenter.

Rob Scharp authored on 01/10/2011 04:49:31
Viewb398d6f

Update posteriorProbability for handling nonpolymorphic markers

Rob Scharp authored on 01/10/2011 04:49:02
View8be0a10

Update Rd files. xyplot method checks for existance of 'predictionRange'. If not found, we use callNextMethod() [Should help avoid conflicts with VanillaICE method for xyplot]

Rob Scharp authored on 01/10/2011 04:48:57
View9937763

Use factor for snpid in xyplotcrlmm (otherwise plots are out of order

Rob Scharp authored on 01/10/2011 04:47:47
View96fb65c

Update generics for posteriorProbability and calculatePosteriorMean (exclude weight from generic of calculatePosteriorMean)

Rob Scharp authored on 01/10/2011 04:47:35
View0a5dbc0

Update predictionRegion to return arrays in the mu and cov list elements (prediction regions are batch-specific)

Rob Scharp authored on 01/10/2011 04:47:24
Viewe516fad

Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean.

Rob Scharp authored on 01/10/2011 04:46:51
March 10, 2011
View70878f9

Create the function rawCopynumber that aliases totalCopynumber

Rob Scharp authored on 10/03/2011 19:30:54
March 2, 2011
Viewc75c54c

fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packages

Rob Scharp authored on 02/03/2011 00:59:03
February 16, 2011
View453e688

commit after bioc rebase

Rob Scharp authored on 16/02/2011 16:19:11
View7e59dce

excplicit coercion of A() and B() to matrices in C1, C2, and C3 functions (affect totalCopynumber)

Rob Scharp authored on 16/02/2011 15:59:48
Viewc717577

Bug in copy number accessors fixed.

Rob Scharp authored on 16/02/2011 15:58:23
View5133e59

Fix bug in CB accessor for nonpolymorphic markers

Rob Scharp authored on 16/02/2011 15:58:19
Viewe252cbe

update ACN function

Rob Scharp authored on 16/02/2011 15:58:01