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View4c4e930
Add calculateRBaf methodRob Scharp authored on 01/10/2011 04:50:37 |
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View7818b53
Remove snpNames method and genericRob Scharp authored on 01/10/2011 04:50:30 |
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View96fb65c
Update generics for posteriorProbability and calculatePosteriorMean (exclude weight from generic of calculatePosteriorMean)Rob Scharp authored on 01/10/2011 04:47:35 |
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View0a5dbc0
Update predictionRegion to return arrays in the mu and cov list elements (prediction regions are batch-specific)Rob Scharp authored on 01/10/2011 04:47:24 |
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Viewe516fad
Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean.Rob Scharp authored on 01/10/2011 04:46:51 |
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Viewc75c54c
fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packagesRob Scharp authored on 02/03/2011 00:59:03 |
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Viewa521b1a
removed generics and methods for sigma2A and sigma2BRob Scharp authored on 30/08/2010 19:41:06 |
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Viewf1e14c0
Removed tryCatch() statements in readIdatFiles. Restored previous implementation.Rob Scharp authored on 30/08/2010 19:40:19 |
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View6b75ec7
Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.RRob Scharp authored on 21/08/2010 02:50:15 |
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View6846d58
Numerous changed to copy number estimation detailed below.Rob Scharp authored on 21/08/2010 02:49:54 |
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Viewd08acba
A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.Rob Scharp authored on 21/08/2010 02:49:47 |
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View69ec864
Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.Rob Scharp authored on 21/08/2010 02:49:14 |
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View8160162
Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definitionRob Scharp authored on 21/08/2010 02:49:06 |
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View97e84a8
Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.Rob Scharp authored on 21/08/2010 02:48:57 |
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View2c958cf
Changed generic for CA and CB to include index i for markers and index j for samplesRob Scharp authored on 21/08/2010 02:48:17 |