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constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ...Rob Scharp authored on 30/08/2010 19:40:33 |
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Export plotCNSetLM for debugging.Rob Scharp authored on 30/08/2010 19:40:28 |
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Exporting list and ffdf classes so that lM<- assignment worksRob Scharp authored on 30/08/2010 19:40:16 |
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git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@49010 bc3139a8-67e5-0310-9ffc-ced21a209358unknown authored on 25/08/2010 02:32:48 |
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methods Ns, medians, corr, and mads return arrays.Rob Scharp authored on 21/08/2010 02:50:19 |
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Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.RRob Scharp authored on 21/08/2010 02:50:15 |
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Changed totalCopyNumber to totalCopynumber to be consistent with caps in crlmmCopynumber. Fixed a few bugs in the .Rd filesRob Scharp authored on 21/08/2010 02:50:10 |
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Edits to CA,CB, ACN accessors for copy numberRob Scharp authored on 21/08/2010 02:50:05 |
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Numerous changed to copy number estimation detailed below.Rob Scharp authored on 21/08/2010 02:49:54 |
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A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.Rob Scharp authored on 21/08/2010 02:49:47 |
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Added methods for flags and flags<-. Added 'flags' as an element to the LinearModelParameter objectRob Scharp authored on 21/08/2010 02:49:41 |
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Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.Rob Scharp authored on 21/08/2010 02:49:14 |
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Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definitionRob Scharp authored on 21/08/2010 02:49:06 |
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Added methods for LinearModelParameter class. removed methods for SnpSuperSet class.Rob Scharp authored on 21/08/2010 02:48:57 |
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Added Ingo to the crlmm authorship. Moved Rafa to the last position.Rob Scharp authored on 21/08/2010 02:48:43 |