March 30, 2011
View 16fadf1

Add vignettes for copy number analysis. Add crlmmGT2.R file

Rob Scharp authored on 30/03/2011 02:41:00
View 284565d

make gender an ff object in genotype function for Affy

Rob Scharp authored on 30/03/2011 02:40:42
View f0f8ba1

Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:07
March 10, 2011
View 0621b63

Add link to compendium in copy number vignette.

Rob Scharp authored on 10/03/2011 19:31:02
February 16, 2011
View 453e688

commit after bioc rebase

Rob Scharp authored on 16/02/2011 16:19:11
View 937a9f3

add open and close statements inside processCEL2. Fix NR in rscrlmmGT2

Rob Scharp authored on 16/02/2011 15:59:37
View 3c46315

Comment open and close statements in stripnormalize

Rob Scharp authored on 16/02/2011 15:59:16
View 0b923f8

replaced genotype.Illumina call in illumina_copynumber with readIdatFiles and crlmmIllumina call from release 2_6

Rob Scharp authored on 16/02/2011 15:59:05
View 3acddff

Remove code used for testing MIN.SAMPLES

Rob Scharp authored on 16/02/2011 15:59:02
View 9e769c7

Add temporary code for checking MIN.SAMPLE in copynumber vignette

Rob Scharp authored on 16/02/2011 15:58:50
View 8b529b4

commented another cat statement inside readIdatFiles

Rob Scharp authored on 16/02/2011 15:58:47
View cd35bbe

Finalize updates to copynumber and illumina_copynumber vignettes for v1.8.3 updates

Rob Scharp authored on 16/02/2011 15:58:28
View c717577

Bug in copy number accessors fixed.

Rob Scharp authored on 16/02/2011 15:58:23
View 5133e59

Fix bug in CB accessor for nonpolymorphic markers

Rob Scharp authored on 16/02/2011 15:58:19
View e28ca8c

fix for finding index of nonpolymorphic markers in genotype function

Rob Scharp authored on 16/02/2011 15:58:14