Bioconductor Code: crlmm

January 20, 2013

	View 3ad9a18 merge local changes with dan's changes on bioc Rob Scharp authored on 20/01/2013 18:31:47

July 8, 2012

	View 063b3d1 Merge branch 'collab' Rob Scharp authored on 08/07/2012 19:00:03

October 1, 2011

	View 4c4e930 Add calculateRBaf method Rob Scharp authored on 01/10/2011 04:50:37
	View 7818b53 Remove snpNames method and generic Rob Scharp authored on 01/10/2011 04:50:30
	View 96fb65c Update generics for posteriorProbability and calculatePosteriorMean (exclude weight from generic of calculatePosteriorMean) Rob Scharp authored on 01/10/2011 04:47:35
	View 0a5dbc0 Update predictionRegion to return arrays in the mu and cov list elements (prediction regions are batch-specific) Rob Scharp authored on 01/10/2011 04:47:24
	View e516fad Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean. Rob Scharp authored on 01/10/2011 04:46:51

March 2, 2011

	View c75c54c fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packages Rob Scharp authored on 02/03/2011 00:59:03

August 30, 2010

	View a521b1a removed generics and methods for sigma2A and sigma2B Rob Scharp authored on 30/08/2010 19:41:06
	View f1e14c0 Removed tryCatch() statements in readIdatFiles. Restored previous implementation. Rob Scharp authored on 30/08/2010 19:40:19

August 21, 2010

	View 6b75ec7 Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.R Rob Scharp authored on 21/08/2010 02:50:15
	View 6846d58 Numerous changed to copy number estimation detailed below. Rob Scharp authored on 21/08/2010 02:49:54
	View d08acba A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object. Rob Scharp authored on 21/08/2010 02:49:47
	View 69ec864 Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods. Rob Scharp authored on 21/08/2010 02:49:14
	View 8160162 Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition Rob Scharp authored on 21/08/2010 02:49:06