January 20, 2013
View3ad9a18

merge local changes with dan's changes on bioc

Rob Scharp authored on 20/01/2013 18:31:47
July 8, 2012
View063b3d1

Merge branch 'collab'

Rob Scharp authored on 08/07/2012 19:00:03
October 1, 2011
View4c4e930

Add calculateRBaf method

Rob Scharp authored on 01/10/2011 04:50:37
View7818b53

Remove snpNames method and generic

Rob Scharp authored on 01/10/2011 04:50:30
View96fb65c

Update generics for posteriorProbability and calculatePosteriorMean (exclude weight from generic of calculatePosteriorMean)

Rob Scharp authored on 01/10/2011 04:47:35
View0a5dbc0

Update predictionRegion to return arrays in the mu and cov list elements (prediction regions are batch-specific)

Rob Scharp authored on 01/10/2011 04:47:24
Viewe516fad

Add generics and methods for predictionRegion, posteriorProbability, and calculatePosteriorMean.

Rob Scharp authored on 01/10/2011 04:46:51
March 2, 2011
Viewc75c54c

fixed cyclic namespace dependency by updating version dependencies in DESCRIPTION, and updating other bioc packages

Rob Scharp authored on 02/03/2011 00:59:03
August 30, 2010
Viewa521b1a

removed generics and methods for sigma2A and sigma2B

Rob Scharp authored on 30/08/2010 19:41:06
Viewf1e14c0

Removed tryCatch() statements in readIdatFiles. Restored previous implementation.

Rob Scharp authored on 30/08/2010 19:40:19
August 21, 2010
View6b75ec7

Added citation to crlmmCopynumber. Deleted many of the commented functions in cnrma-functions.R

Rob Scharp authored on 21/08/2010 02:50:15
View6846d58

Numerous changed to copy number estimation detailed below.

Rob Scharp authored on 21/08/2010 02:49:54
Viewd08acba

A number of changes to fit.lm1 and crlmmCopynumber. The number of genotypes is now stored as part of the CNSet class object.

Rob Scharp authored on 21/08/2010 02:49:47
View69ec864

Added help files for copy number accessors. Fixed bugs in CA, CB, and total copy number methods.

Rob Scharp authored on 21/08/2010 02:49:14
View8160162

Updated sample.CNSetLM helpfile with coercion to v1.0.1 of the CNSet class definition

Rob Scharp authored on 21/08/2010 02:49:06