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changes to crlmmWrapper. updated vignettes in inst/scripts.Rob Scharp authored on 04/10/2009 02:37:32 |
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changes to vignette. removed crlmmIlluminaWrapper function. added boxplot methodRob Scharp authored on 14/08/2009 14:14:25 |
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several updates to vignette, documentation, and copy number for illumina.Rob Scharp authored on 13/08/2009 19:47:13 |
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updated readIdatFilesRob Scharp authored on 04/08/2009 15:18:36 |
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Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.Patrick Aboyoun authored on 24/07/2009 03:16:33 |
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added scanDates<- for CrlmmSetList. Suggests VanillaICE>=1.7.8Rob Scharp authored on 16/07/2009 13:32:48 |
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computeCopynumber returns CrlmmSetList objectRob Scharp authored on 14/07/2009 17:22:19 |
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View 6446394
beginning of copy number methods for illumina. some work on copy number estimation for chromosome XRob Scharp authored on 06/07/2009 19:24:27 |
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View 45dab54
update computeCopynumber, added .R files for new classes/methodsRob Scharp authored on 29/06/2009 12:29:11 |
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added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes.Rob Scharp authored on 25/06/2009 12:54:08 |
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View a6a2c12
updated biasAdjNP and biasAdj functionsRob Scharp authored on 09/06/2009 14:23:02 |
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View 5dab0fa
updated cnrma function and the copy number vignetteRob Scharp authored on 29/03/2009 19:59:40 |
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updated copynumber vignetteRob Scharp authored on 25/03/2009 13:27:44 |
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changes to computeCopynumber function. Exporting wrapper for extracting dates from the cel file headerRob Scharp authored on 25/03/2009 13:12:49 |
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View 7f4ca01
added a bias correction for common copy number variantsRob Scharp authored on 04/03/2009 19:24:13 |