October 4, 2009
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changes to crlmmWrapper. updated vignettes in inst/scripts.

Rob Scharp authored on 04/10/2009 02:37:32
August 14, 2009
View bd722b7

changes to vignette. removed crlmmIlluminaWrapper function. added boxplot method

Rob Scharp authored on 14/08/2009 14:14:25
August 13, 2009
View 43b13ec

several updates to vignette, documentation, and copy number for illumina.

Rob Scharp authored on 13/08/2009 19:47:13
August 4, 2009
View fe3e3f6

updated readIdatFiles

Rob Scharp authored on 04/08/2009 15:18:36
July 24, 2009
View 4b098e3

Removed scanDate slot from eSet and replaced it with protocolData slot. Also updated eSet objects and bumped package version numbers.

Patrick Aboyoun authored on 24/07/2009 03:16:33
July 16, 2009
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added scanDates<- for CrlmmSetList. Suggests VanillaICE>=1.7.8

Rob Scharp authored on 16/07/2009 13:32:48
July 14, 2009
View b9c7172

computeCopynumber returns CrlmmSetList object

Rob Scharp authored on 14/07/2009 17:22:19
July 6, 2009
View 6446394

beginning of copy number methods for illumina. some work on copy number estimation for chromosome X

Rob Scharp authored on 06/07/2009 19:24:27
June 29, 2009
View 45dab54

update computeCopynumber, added .R files for new classes/methods

Rob Scharp authored on 29/06/2009 12:29:11
June 25, 2009
View 38fb1b8

added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes.

Rob Scharp authored on 25/06/2009 12:54:08
June 9, 2009
View a6a2c12

updated biasAdjNP and biasAdj functions

Rob Scharp authored on 09/06/2009 14:23:02
March 29, 2009
View 5dab0fa

updated cnrma function and the copy number vignette

Rob Scharp authored on 29/03/2009 19:59:40
March 25, 2009
View 001bc9f

updated copynumber vignette

Rob Scharp authored on 25/03/2009 13:27:44
View f8af2ff

changes to computeCopynumber function. Exporting wrapper for extracting dates from the cel file header

Rob Scharp authored on 25/03/2009 13:12:49
March 4, 2009
View 7f4ca01

added a bias correction for common copy number variants

Rob Scharp authored on 04/03/2009 19:24:13