June 29, 2009
View 45dab54

update computeCopynumber, added .R files for new classes/methods

Rob Scharp authored on 29/06/2009 12:29:11
June 25, 2009
View 38fb1b8

added classes/methods for intermediate files and copy number analysis; added wrapper for preprocessing and genotypes.

Rob Scharp authored on 25/06/2009 12:54:08
June 18, 2009
View babcd2c

Added scanDate slot to Biobase's eSet class, added functionality in affy to utilize the new scanDate slot and updated all the packages that create direct subclasses of eSet, ExpressionSet or NChannelSet.

Patrick Aboyoun authored on 18/06/2009 00:00:30
June 9, 2009
View a6a2c12

updated biasAdjNP and biasAdj functions

Rob Scharp authored on 09/06/2009 14:23:02
June 8, 2009
View f0f02fc

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@40000 bc3139a8-67e5-0310-9ffc-ced21a209358

Benilton Carvalho authored on 08/06/2009 14:54:39
View 685829f

Adding batchQC to phenoData

Benilton Carvalho authored on 08/06/2009 14:49:43
May 7, 2009
View 9564b5c

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@39329 bc3139a8-67e5-0310-9ffc-ced21a209358

unknown authored on 07/05/2009 00:11:16
April 27, 2009
View eb2aa77

fixed bug in nonpolymorphic function

Rob Scharp authored on 27/04/2009 14:11:59
April 20, 2009
View 701d59a

Bumped pkg versions for BioC 2.5 devel line.

Patrick Aboyoun authored on 20/04/2009 23:44:07
View f46adc5

Bumped pkg versions for BioC 2.4 release.

Patrick Aboyoun authored on 20/04/2009 23:24:12
April 9, 2009
View e19041a

added copy number vignette for illumina. see inst/scripts

Rob Scharp authored on 09/04/2009 18:09:04
April 8, 2009
View b5bb7de

Fixed some status messages and downstream vignette

Benilton Carvalho authored on 08/04/2009 03:15:55
View b938db2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm@38585 bc3139a8-67e5-0310-9ffc-ced21a209358

unknown authored on 08/04/2009 02:01:07
View 467ebfd

change to internal function

Rob Scharp authored on 08/04/2009 00:58:49
April 7, 2009
View fc48b56

fix bug in cnrma. cnrma now accepts other cdfNames

Rob Scharp authored on 07/04/2009 23:32:21