August 21, 2010
View2551de7

changed computeCopynumber.CNSet to cnCNSet and commented thresholdCopynumber() in cnCNSet.

Rob Scharp authored on 21/08/2010 02:48:31
View805ca33

added ACN method in methods-CNSet.R. CA and CB call ACN.

Rob Scharp authored on 21/08/2010 02:48:26
Viewddc94a5

commented gc() calls

Rob Scharp authored on 21/08/2010 02:48:21
View2c958cf

Changed generic for CA and CB to include index i for markers and index j for samples

Rob Scharp authored on 21/08/2010 02:48:17
View481f470

added generics for CA, CB, and totalCopyNumber (moved from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:14
View752632c

added totalCopyNumber method to methods-CNSet (removed from oligoClasses)

Rob Scharp authored on 21/08/2010 02:48:11
View63fb6e4

Added CA, CB methods to methods-CNSet.R

Rob Scharp authored on 21/08/2010 02:48:08
View88f551c

commented CA<- CB<- in nonpolymorphic, polymorphic, and computeCopynumber functions

Rob Scharp authored on 21/08/2010 02:48:04
Viewc5305d8

changed 'batches' to 'sample.strata' in genotype function to avoid confusion

Rob Scharp authored on 21/08/2010 02:48:00
View9df4128

Commented CA<- assignment in fit.lm4 (chr X nonpolymorphic markers)

Rob Scharp authored on 21/08/2010 02:47:57
View45ec15f

Commented CA<- CB<- assigments in fit.lm3 function (chr X polymorphic markers)

Rob Scharp authored on 21/08/2010 02:47:54
View29f437a

Commented CA(object)<- assignment for nonpolymorphic markers in fit.lm2 function

Rob Scharp authored on 21/08/2010 02:47:51
View9dfdcb6

Commented all of the cA, cB and CA(object) <- CB(object)<- assignments in lm.fit1 function

Rob Scharp authored on 21/08/2010 02:47:48
Viewc64b8c2

Commented CA and CB initialization in construct function.

Rob Scharp authored on 21/08/2010 02:47:44
Viewbf24450

v1.7.11 removed 'copyNumber' method from methods-CNSet.R.

Rob Scharp authored on 21/08/2010 02:47:41