Bioconductor Code: Browse

October 4, 2011

	View1e0ed16 Issue8: genotypeInf. Rob Scharp authored on 04/10/2011 16:11:49
	Viewaf08b5d crlmm on github Rob Scharp authored on 04/10/2011 16:11:02
	Viewd773ad8 Update to crlmm-illumina: by Matt Ritchie - brought from GitHub Benilton Carvalho authored on 04/10/2011 11:02:32

October 1, 2011

	View301fb7d Removed 'signed=FALSE' argument from readBin() calls in readIDAT() and readBMP() is cases where the 'size' argument is greater than 2 [apparently this produces a warning in the devel version or R - problem reported by Kasper Daniel Hansen] Rob Scharp authored on 01/10/2011 04:50:24

September 29, 2011

	View82ef3a7 Removed 'signed=FALSE' args from calls to readBin() in readIDAT() and readBPM() when size is something other than 1 or 2 (produced warnings - thanks to Kasper Daniel Hansen for reporting this) unknown authored on 29/09/2011 07:09:34

August 12, 2011

	View01aea5e Added 'humancytosnp12v2p1h' as a new chip type for Illumina arrays unknown authored on 12/08/2011 06:42:13

April 8, 2011

	View415a3b0 fit.lm4 returns a CNSet object if assayData elements are matrices Rob Scharp authored on 08/04/2011 19:05:07

March 30, 2011

	View284565d make gender an ff object in genotype function for Affy Rob Scharp authored on 30/03/2011 02:40:42
	View5b19b0f crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2. Rob Scharp authored on 30/03/2011 02:40:33
	View5c9f60e write to calls and callProbability slots in processIDAT. Remove corresponding writes from genotypeInf. Rob Scharp authored on 30/03/2011 02:40:18
	View252da92 open and close cnSet$gender in genotypeInf Rob Scharp authored on 30/03/2011 02:40:13
	Viewf0f8ba1 Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf. Rob Scharp authored on 30/03/2011 02:40:07

March 18, 2011

	Viewac7e0c8 remove callSet from genotype.Illumina args Rob Scharp authored on 18/03/2011 01:57:35
	Viewcfa9fbb Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir. Rob Scharp authored on 18/03/2011 01:57:30
	Viewd878c18 genotype.Illumina only supports ff. no matrix option Rob Scharp authored on 18/03/2011 01:57:25