October 4, 2011
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Issue8: genotypeInf.

Rob Scharp authored on 04/10/2011 16:11:49
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crlmm on github

Rob Scharp authored on 04/10/2011 16:11:02
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Update to crlmm-illumina: by Matt Ritchie - brought from GitHub

Benilton Carvalho authored on 04/10/2011 11:02:32
October 1, 2011
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Removed 'signed=FALSE' argument from readBin() calls in readIDAT() and readBMP() is cases where the 'size' argument is greater than 2 [apparently this produces a warning in the devel version or R - problem reported by Kasper Daniel Hansen]

Rob Scharp authored on 01/10/2011 04:50:24
September 29, 2011
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Removed 'signed=FALSE' args from calls to readBin() in readIDAT() and readBPM() when size is something other than 1 or 2 (produced warnings - thanks to Kasper Daniel Hansen for reporting this)

unknown authored on 29/09/2011 07:09:34
August 12, 2011
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Added 'humancytosnp12v2p1h' as a new chip type for Illumina arrays

unknown authored on 12/08/2011 06:42:13
April 8, 2011
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fit.lm4 returns a CNSet object if assayData elements are matrices

Rob Scharp authored on 08/04/2011 19:05:07
March 30, 2011
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make gender an ff object in genotype function for Affy

Rob Scharp authored on 30/03/2011 02:40:42
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crlmmGT2 <- rscrlmmGT2. Removed rscrlmmGT2.

Rob Scharp authored on 30/03/2011 02:40:33
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write to calls and callProbability slots in processIDAT. Remove corresponding writes from genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:18
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open and close cnSet$gender in genotypeInf

Rob Scharp authored on 30/03/2011 02:40:13
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Rewrote illumina_copynumber vignette. Add functions and docmentation for constructInf, preprocessInf, and genotypeInf.

Rob Scharp authored on 30/03/2011 02:40:07
March 18, 2011
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remove callSet from genotype.Illumina args

Rob Scharp authored on 18/03/2011 01:57:35
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Check batch early in genotype function. Add genotypeRS function to genotype Illumina data. Fix stop message in getVarInEnv -- do not try to print envir.

Rob Scharp authored on 18/03/2011 01:57:30
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genotype.Illumina only supports ff. no matrix option

Rob Scharp authored on 18/03/2011 01:57:25