August 30, 2010
View12e6763

more pruning of NAMESPACE

Rob Scharp authored on 30/08/2010 19:41:10
Viewc6d091f

cleaned some of the temporary exports in the namespace

Rob Scharp authored on 30/08/2010 19:41:08
Viewa521b1a

removed generics and methods for sigma2A and sigma2B

Rob Scharp authored on 30/08/2010 19:41:06
View56b783e

Revised accesors in methods-AssayData -- some of the conflicts resolved by hand during rebase were incorrect

Rob Scharp authored on 30/08/2010 19:41:03
View97e1fa7

Removed setValidity method for CNSetLM

Rob Scharp authored on 30/08/2010 19:41:01
Viewe33a04e

.gitignore ignores copynumber-* and copynumber.log

Rob Scharp authored on 30/08/2010 19:40:59
View1b3b1c3

added open and close statements in Ns and corr accessors

Rob Scharp authored on 30/08/2010 19:40:57
Viewd5b39e2

CB estimates were NA for SNP indices were mixed with NP indices. Bug was fixed in the ACN function

Rob Scharp authored on 30/08/2010 19:40:54
View8e2d935

my .emacs wants to remove white spaces at end of lines. no substantive changes here

Rob Scharp authored on 30/08/2010 19:40:50
Viewdfb77c2

bumped version to 1.7.13

Rob Scharp authored on 30/08/2010 19:40:48
View39f4ced

bumped to version 1.7.13

Rob Scharp authored on 30/08/2010 19:40:46
View0198a9a

Fixed several bugs in the CA, CB, ACN functions. Updated the copynumber vignette

Rob Scharp authored on 30/08/2010 19:40:42
View3e4db4b

constructIlluminaAssayData allows for either ff or matrices. Fixed bug in accessors for medians, mads, ...

Rob Scharp authored on 30/08/2010 19:40:33
View52e58a4

Export plotCNSetLM for debugging.

Rob Scharp authored on 30/08/2010 19:40:28
View10b0407

moved totalCopyNumber method to oligoClasses package.

Rob Scharp authored on 30/08/2010 19:40:26